BAC Information

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BAC

Clone NameMSMg01-344C04
Chromosome8 (Build37)
Map Location 34,755,025 - 34,947,245
singlet/doubletdoublet
Overlap geneGsr, Gtf2e2, Rbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344C04.T7 (MSMg01no344_c04.b1)MSMg01-344C04.TJ (MSMg01no344_c04.g1)
ACCAG457273AG457274
length742730
length of high quality
(start - end)		551 (46 - 596)594 (75 - 668)
definitionCHROMAT_FILE: MSMg01no344_c04.b1 PHD_FILE: MSMg01no344_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:13 2005CHROMAT_FILE: MSMg01no344_c04.g1 PHD_FILE: MSMg01no344_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,755,025 - 34,755,571)(34,946,765 - 34,947,245)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTCTCTTCAACCATATGGTGGCTTACAACCATCTGTAATGGGA
TCGGATGTGTGTGTGAAGACAGTGACAGTGTATTTATATAAATAGAAAAT
AAAGAAATCGTCAAAACTAAAAGATAATTTAAAAAAAAAAATAGAAATTG
CAGCCTGGCAAGATAGCTCAGTGGGTAACACCTGAGTTCATTCCAGAACC
CACAGTGGAAGGAGAGAACCAACTCTCCCGAAAGTTGTTCTCTTGACCTA
CACGCGCATGCACACCTGAGAGTGTTCTCAGCATAGACAACCAGCACTTC
CTGCTTCCATTGGCTGTAATCCCCCAGCACCATGGCCACCACATCCTTAC
TCCACAGAACAGAAGACCACAGTGATGGGTCCACTAAGTCAAGCTTCTCA
ATGGAGGCAAGTGTAATAGTGCTCTGACACGATCTGATCAGTAACTCCAA
GAAAAAGGAAAAGGTGAGTGTTAGAGACCTCTGCAAGATGGAGTGGTTTA
AGGTGACCTTTTCAAGATGGAGCTCTGGTTGTTAATAGATTAAGACCAAC
AAGGTACAGAAATGGAAGTCAGATTTCCCACTCCCTTTTGGGTTGTTGTG
GATTGAAACCAGATCTGATCTCTATCCCTAGCTAGGTGGTTATTTCAAAG
AAATGGGGAGTTAGGGATTTGGTCATTTGAATTTTCATATTT

ATTGATTTGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGACGTTCAACCCCAAGACCTAAGGA
CAAATGCTATAGGGCCTAGAGGCTTGTCATCTCTCCTCGGGTTGATACAG
GCTCAGGACTAAAGGATGCTTCAAAGAAGGTTGGTGGGGGTTAGTGTAGG
AAAGAACTTTGTGAATTACGTGCTGCTGCTGTGTCTGATGTGCTCTGGTG
TGAATGCACAGGGTCTTCTGGAGGAACGACGGTTACCTCTCAGCAAAGGC
ACCGCAGTAGTCCGTAGTTGGGAATAGTTGATTGTAAGGGCAACACAGTT
CTTTGTTTTGTTTTCCTTCAACACAGGGTCTCACTCTGTAGCCCATGCGA
TCCCCGAACTCATGATAATGCTATGGCCTCTGTTTCCTCCCATGAGCTAC
GATTCCTGACGGGAGCTGGTGGTAACAGGTGTGGTGGGAGGAAGTGGCTC
TCAGTTGTACGATCCCAGAAGCAATTGCTGCTCCAGGCAACAGCCTTGTC
TCCCAATGTATGTTGTGGGAGTACAGTCAGACAGTTTACTAACTAAGGGT
CCTGAGTTATTGTTTTGTTTTGTTTTTATTTTTTTAATTAATTTATTTAT
TTTATTTATATGAGTACACTGTATCTGTCTTCAGAGACACCTGAAGAGGG
CGCCAGATCCTATTTCAGATGGTTGTGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_c04.b1 MSMg01no344_c04.b1 CHROMAT_FILE:
MSMg01no344_c04.b1 PHD_FILE: MSMg01no344_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:13 2005
         (551 letters)



>mm_chr8_34754821_34755771
          Length = 951

 Score = 1035 bits (535), Expect = 0.0
 Identities = 544/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattctcttcaaccatatggtggcttacaaccatctgtaatgggatcggatgtg 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattctcagcaaccatatggtggcttacaaccatctgtaatgggatcggatgtg 264

                                                                       
Query: 65  tgtgtgaagacagtgacagtgtatttatataaatagaaaataaagaaatcgtcaaaacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtgaagacagtgacagtgtatttatataaatagaaaataaagaaatcgtcaaaacta 324

                                                                       
Query: 125 aaagataatttaaaaaaaaaaatagaaattgcagcctggcaagatagctcagtgggtaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagataatttaaaaaaaaaaatagaaattgcagcctggcaagatagctcagtgggtaac 384

                                                                       
Query: 185 acctgagttcattccagaacccacagtggaaggagagaaccaactctcccgaaagttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acctgagttcattccagaacccacagtggaaggagagaaccaactctcccgaaagttgtt 444

                                                                       
Query: 245 ctcttgacctacacgcgcatgcacacctgagagtgttctcagcatagacaaccagcactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcttgacctacacgcgcatgcacacctgagagtgttctcagcatagacaaccagcactt 504

                                                                       
Query: 305 cctgcttccattggctgtaatcccccagcaccatggccaccacatccttactccacagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgcttccattggctgtaatcccccagcaccatggccaccacatccttactccacagaa 564

                                                                       
Query: 365 cagaagaccacagtgatgggtccactaagtcaagcttctcaatggaggcaagtgtaatag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaagaccacagtgatgggtccactaagtcaagcttctcaatggaggcaagtgtaatag 624

                                                                       
Query: 425 tgctctgacacgatctgatcagtaactccaagaaaaaggaaaaggtgagtgttagagacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctctgacacgatctgatcagtaactccaagaaaaaggaaaaggtgagtgttagagacc 684

                                                                       
Query: 485 tctgcaagatggagtggtttaaggtgaccttttcaagatggagctctggttgttaataga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 685 tctgcaagatggagtggtttaaggtgaccttttcaagatggagctctggttgttaatagt 744

                  
Query: 545 ttaagac 551
           |||||||
Sbjct: 745 ttaagac 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_c04.g1 MSMg01no344_c04.g1 CHROMAT_FILE:
MSMg01no344_c04.g1 PHD_FILE: MSMg01no344_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:14 2005
         (594 letters)



>mm_chr8_34946765_34947758
          Length = 994

 Score =  922 bits (477), Expect = 0.0
 Identities = 480/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgttcaaccccaagacctaaggacaaatgctatagggcctagaggcttgtcatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agacgttcaaccccaagacctaaggacaaatgctatagggcctagaggcttgtcatctct 422

                                                                       
Query: 61  cctcgggttgatacaggctcaggactaaaggatgcttcaaagaaggttggtgggggttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctcgggttgatacaggctcaggactaaaggatgcttcaaagaaggttggtgggggttag 362

                                                                       
Query: 121 tgtaggaaagaactttgtgaattacgtgctgctgctgtgtctgatgtgctctggtgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtaggaaagaactttgtgaattacgtgctgctgctgtgtctgatgtgctctggtgtgaa 302

                                                                       
Query: 181 tgcacagggtcttctggaggaacgacggttacctctcagcaaaggcaccgcagtagtccg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgcacagggtcttctggaggaacaacggttacctctcagcaaaggcaccgcagtagtccg 242

                                                                       
Query: 241 tagttgggaatagttgattgtaagggcaacacagttctttgttttgttttccttcaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagttgggaatagttgattgtaagggcaacacagttctttgttttgttttccttcaacac 182

                                                                       
Query: 301 agggtctcactctgtagcccatgcgatccccgaactcatgataatgctatggcctctgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agggtctcactctgtagcccatgcgatccccgaactcatgataatgctatggcctctgtt 122

                                                                       
Query: 361 tcctcccatgagctacgattcctgacgggagctggtggtaacaggtgtggtgggaggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcctcccatgagctacgattcctgacgggagctggtggtaacaggtgtggtgggaggaag 62

                                                                       
Query: 421 tggctctcagttgtacgatcccagaagcaattgctgctccaggcaacagccttgtctccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggctctcagttgtacgatcccagaagcaattgctgctccaggcaacagccttgtctccc 2

            
Query: 481 a 481
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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