BAC Information

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BAC

Clone NameMSMg01-344J07
Chromosome8 (Build37)
Map Location 60,838,570 - 60,838,847
singlet/doubletsinglet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344J07.T7 (MSMg01no344_j07.b1)MSMg01-344J07.TJ (MSMg01no344_j07.g1)
ACCAG457612AG457613
length740770
length of high quality
(start - end)		464 (41 - 504)321 (77 - 397)
definitionCHROMAT_FILE: MSMg01no344_j07.b1 PHD_FILE: MSMg01no344_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:48 2005CHROMAT_FILE: MSMg01no344_j07.g1 PHD_FILE: MSMg01no344_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTGTTATCGGGTTACCTCACTAAGGATGATATCCTCCAGATCCATCCA
TTTGTCCAAGAATTTTATAAATTCATTGTTTTTAATAGCTGAGTAGTACT
CCATTGTGTAAATATACCAAATTTTCTGTATCCATTCTTCTGTTGAGGGA
CATCTGGGTTCATTCCAGCTTCTTGCTATTAAAAATAAGGCTGCTATGAA
CATAGTAGAGCATGTGTTCTTCTTACCAGTTGGAACTTCTTCTGCGTATA
TGCCCAGGAGAGGTATTGCTGGATCTTTCAGTAGTATTATGTCCAATTTT
CTGAGGAACCTCCAGACTGACTTCCAGAGTGGTTGTACAAGCTTGCAATC
CCACCAGCAATGGAAGAGTGTTTCTCTTTCTCCACATCCTCGCCAGCATC
TGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGTGGA
ATCTCAAGGTTGTTTTTGATTGCGTTTCCCTGTTGATTAAGGATGTTCAA
CANTTTTTCATGTGCTTCTTAGCCATTCCGAATTCCTCATTTGAACCTTC
TTTTTTTGGCAGCTTATGCTTTTCTTGTACCTTTTAAAAAGGGGTTTCCC
TGTTCCCTAAATTTTACTAATTTTTTTTCACATTTCTTTTTTAAAGGCTA
TACCCCCATAACCCCCCGGTTATTACATTCTCCCCCTTCG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCTGAGGCAGACTGGGAAAAC
AGAAGCAAGTCCAGAAAGACATTAGCAGAGTTCATCATCATAGACCCATG
GTCACTATTTCCATCATCTGTATTTATAACTGTACTGTACCTGTTTCATA
TATATATAATGAGATAGATATATAGATATATAGATTACATAGAAGATACA
TAGATACATATAGATAGAGACTAGATGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
TATTCATATATTGACTCCCCCCCCCCTTATTACAATATTATTTATTTATT
TATACATTTTTTTCTCTTCCTCTTCCTCATTTTCCTTTTTTATCCTTTTA
TACCTTTCTCATTTTCTTTTCCTCCTATTATCCTTCCTGATTAGCTTTTT
TACTTTCTCTCTATTTCTTCTTTTTTTTTTGACTTTATCCTCCTCATTTT
AATTCTCCTTTTCATTACAGTTTTATTACAATCTTTCCCCCTTTTTTATT
TTACCTCATTTTTCGTTTTTCTCTTTCCTTTTTTTCCTCTTTCATGCTTT
TTTATCATCGCTCAAGCGAAAATCTTTTGGACTCCTTCTCCCCTATTTGA
CCTTATTTCCTCCTTACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_j07.g1 MSMg01no344_j07.g1 CHROMAT_FILE:
MSMg01no344_j07.g1 PHD_FILE: MSMg01no344_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:48 2005
         (321 letters)



>mm_chr8_60838516_60839236
          Length = 721

 Score =  491 bits (254), Expect = e-143
 Identities = 270/278 (97%), Gaps = 6/278 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctgaggcagactgggaaaacagaagcaagtccagaaagacattagcagagttcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atagctgaggcagactgggaaaacagaagcaagtccagaaagacattagcagagttcatc 273

                                                                       
Query: 61  atcatagacccatggtcactatttccatcatctgtatttataactgtactgtacctgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atcatagacccatggtcactatttccatcatctgtatttataactgtactgtacctgttt 213

                                                                       
Query: 121 c----atatatatataatgagatagatatatagatatatagattacatagaagatacata 176
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 catatatatatatataatgagatagatatatagatatatagattacatagaagatacata 153

                                                                       
Query: 177 gatacatatagatagagactagatgatagatagatagatagatagatagatagatagata 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gatacatatagatagagactagatgatagatagatagatagatagatagatagatagata 93

                                                 
Query: 237 gatagatagatagatagatag--atagatagatagata 272
           |||||||||||||||||||||  | ||||||| |||||
Sbjct: 92  gatagatagatagatagatagggagagatagacagata 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 35
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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