Query= MSMg01no344_j23.b1 MSMg01no344_j23.b1 CHROMAT_FILE:
MSMg01no344_j23.b1 PHD_FILE: MSMg01no344_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:52 2005
(429 letters)
>mm_chr8_8347238_8348065
Length = 828
Score = 745 bits (385), Expect = 0.0
Identities = 414/424 (97%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 6 gaattcgctgaatctctctctgattaattattcaccagcactcagaacttttcatgacac 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 206 gaattcgctgaatctct-tctgattaattattcaccagcactcagaacttttcatgatac 264
Query: 66 tttgtagactccatgaagctctaatgtattctatgcatggtatagaaattaggaaatcca 125
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtagactccatgaagccctaatgtattctatgcatggtatagaaattaggaaatcca 324
Query: 126 tactttttcacaggaaaaaaataaaattacatcttccttttgattccttcagtgacctgg 185
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactttttcacaggaaaaaattaaaattacatcttccttttgattccttcagtgacctgg 384
Query: 186 taagtgacaaatcacagaagtcacagcataacagtgattgacattgctttcattctcagc 245
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 taagtgacaaatcacagaagtcacagcataacagtgattgacatcgctttcattctcagc 444
Query: 246 tctctctaatcagtcaccacgcttagcacacagacctctttctaaatctcatgacttggt 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 tctctctaatcagtcaccacgcttagcacacagacctctttctaaatctcatgacttgct 504
Query: 306 gcattcaccacgaagcacgcataccatgatctccaaaaacatgtatgctctcttaatgat 365
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcattcaccacgaagcacgcacaccatgatctccaaaaacatgtatgctctcttaatgat 564
Query: 366 tttcaaggtgactaanaatatggtctgcttttctttgaaatgctaaaccatttattttac 425
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 tttcaaggtgactaaaaatatggtctgcttttatttgaaatgctaaaccatttattttat 624
Query: 426 acat 429
||||
Sbjct: 625 acat 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 828
Length adjustment: 9
Effective length of query: 420
Effective length of database: 819
Effective search space: 343980
Effective search space used: 343980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_j23.g1 MSMg01no344_j23.g1 CHROMAT_FILE:
MSMg01no344_j23.g1 PHD_FILE: MSMg01no344_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:52 2005
(442 letters)
>mm_chr8_8506772_8507613
Length = 842
Score = 795 bits (411), Expect = 0.0
Identities = 435/443 (98%), Gaps = 2/443 (0%)
Strand = Plus / Minus
Query: 1 tatgtcaaatgatgaggcagttccttgtgatttctgaaatagagagaggtacatttcttc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 642 tatgtcaaatgatgaggcagttccttgtgatttctggaatagagagaggtacatttcttc 583
Query: 61 ttgaggcagcacacaagaagacagg-tgcctctgttgactttgtgtattgatgttgtggt 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 582 ttgaggcagcacacaagaagacaggttgcctctgttgactttgtgtattgatgttgtggt 523
Query: 120 ctaatgggaatatcagcttaaattgcagaaacatctactccttcatctactttggagacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 522 ctaatgggaatatcagcttaaattgcagaaacatctactccttcatctactgtggagacc 463
Query: 180 tggaaccaagccagagtcaagttcaaggccttgagagatgctggaggcctatgtggtaca 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 462 tggaaccaagccagagtcaagttcaaggccctgagagatgctggaggcctatgtggtaca 403
Query: 240 aataatattcaagtcatcacttcctactacaacaacaacaaaaaaaggagctaagaaagg 299
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 402 aataatattcaagccatcacttcctactacaacaacaac-aaaaaaggagctaagaaagg 344
Query: 300 cagtgttaaccagttcatcaactgaattagcttgttctgtcttccaggaaacaatggctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagtgttaaccagttcatcaactgaattagcttgttctgtcttccaggaaacaatggctc 284
Query: 360 ctgtcagggaagagaagtgttcatagcaagctagcagaagcctcaaaaacggaggtttgt 419
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctgttagggaagagaaatgttcatagcaagctagcagaagcctcaaaaacggaggtttgt 224
Query: 420 agttaattttcaaaagcttaatg 442
|||||||||||||||||||||||
Sbjct: 223 agttaattttcaaaagcttaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
