Query= MSMg01no344_l04.b1 MSMg01no344_l04.b1 CHROMAT_FILE:
MSMg01no344_l04.b1 PHD_FILE: MSMg01no344_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:58 2005
(516 letters)
>mm_chr8_88459885_88460800
Length = 916
Score = 928 bits (480), Expect = 0.0
Identities = 504/512 (98%)
Strand = Plus / Minus
Query: 5 gaattcctctgagcccaatgtacacgtaagattcaaaagcacgctaagaaatcatactgg 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 716 gaattcctctgagcccaatgtacacgtaagattcaaaaacacgctaagaaatcatactgg 657
Query: 65 cagaacatttatacctaagattgaaatgcctgcttaggcaggtcagattccagaagagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cagaacatttatacctaagattgaaatgcctgcttaggcaggtcagattccagaagagta 597
Query: 125 aagcttcaacaagcagcaaggcagcagtcacagtggactgtaagtgagtgtgctctatgg 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 596 aagcttcaacaagcagcaaggcagcagtcacagtggactgtgagtgagtgtgctctatgg 537
Query: 185 agtgtgcatagaaaagaggggttcgctgttaaatagtaggcatggcctcaggcacttcaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 536 agtgtgcatagaaaagaggggttcgctgttaaatagtaggcatggcctcaggtacttcaa 477
Query: 245 aggaagcaacgccacgacaaaaaccaagccaatcactaccagcatcacagcagacctgga 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aggaagcaacgccatgacaaaaaccaagccaatcactaccagcatcacagcagacctgga 417
Query: 305 gagtcagtgccactcccttttctcctttgcaacctaggaagatctagctggtccaagctg 364
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 416 gagtcagtgccactcccttttctcctttgcagcttaggaagatctagccggtccaagctg 357
Query: 365 ctttaatccaggatgcctggcagtcttcttgagaaacactagaagacttacaacctaccc 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctttagtccaggatgcctggcagtcttcttgagaaacactagaagacttacaacctaccc 297
Query: 425 caatttgttaacttccttattgggcttccttttcttatcgttttggccgaacccactgtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caatttgttaacttccttattgggcttccttttcttatcgttttggccgaacccactgtc 237
Query: 485 tgcaccatacctctgtgactaagaacactagt 516
||||||||||||||||||||||||||||||||
Sbjct: 236 tgcaccatacctctgtgactaagaacactagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_l04.g1 MSMg01no344_l04.g1 CHROMAT_FILE:
MSMg01no344_l04.g1 PHD_FILE: MSMg01no344_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:58 2005
(540 letters)
>mm_chr8_88358994_88359939
Length = 946
Score = 992 bits (513), Expect = 0.0
Identities = 536/547 (97%), Gaps = 8/547 (1%)
Strand = Plus / Plus
Query: 1 actctatagggaagattcaattcatagtttcatttgaggttcccttataaatatctttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctatagggaagattcaattcatagtttcatttgaggttcccttataaatatctttta 260
Query: 61 gctgaatatttttctgtacaatttggtaatcaacaagattttagtgcagacaaataaaat 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgaatatttttctgtacaaattggtaatcaacaagattttagtgcagacaaataaaat 320
Query: 121 atcatgtccatgatcatcccaactctgccttatccat------ttttttttttttaataa 174
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 atcatgtccatgatcatcccaactctgccttatccatgtttttttttttttttttaataa 380
Query: 175 gcagcacctgcacatagtattcttgtaaatatttaaaggacaagtgtatgtgctaagatt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcacctgcacatagtattcttgtaaatatttaaaggacaagtgtatgtgctaagatt 440
Query: 235 gtttgaatttacaaatgttgacagaaagcataccggcatttgctgtctatgtcaggatta 294
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gtttgaatttacaaatgttgacagaaagcatactggcatttgctgtctatgtcaggatta 500
Query: 295 tcatttgccttttcagataggacttcaaatccatgaatggattggtatagcagattgact 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatttgccttttcagataggacttcaaatccatgaatggattggtatagcagattgact 560
Query: 355 cacaacttacactttttgtatttttctggaatgggaaaacttgaaagcaaaacag-aggg 413
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 561 cacaacttacactttttgtatttttctggaatgggaaaacttgaaagcaaaa-aggaggg 619
Query: 414 cttgccagttatcctggcatctgcaatgctaagctaactgtgaggctgtgatagccaggt 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attgccagttatcctggcatctgcaatgctaagctaactgtgaggctgtgatagccaggt 679
Query: 474 tgactggttttcacaggcatgtggggtgaggcaatgtctttacgtcttctgcatccatct 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgactggttttcacaggcatgtggggtgaggcaatgtctttacgtcttctgcatccatct 739
Query: 534 ttgtgtt 540
|||||||
Sbjct: 740 ttgtgtt 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 946
Length adjustment: 10
Effective length of query: 530
Effective length of database: 936
Effective search space: 496080
Effective search space used: 496080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
