BAC Information

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BAC

Clone NameMSMg01-344O11
Chromosome8 (Build37)
Map Location 50,092,295 - 50,246,529
singlet/doubletdoublet
Overlap geneLOC100039866
Upstream geneLOC100040113, Dctd, Odz3, 2900073C17Rik
Downstream gene4930555F03Rik, LOC100039919, EG667495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344O11.T7 (MSMg01no344_o11.b1)MSMg01-344O11.TJ (MSMg01no344_o11.g1)
ACCAG457855AG457856
length744775
length of high quality
(start - end)
244 (70 - 313)299 (67 - 365)
definitionCHROMAT_FILE: MSMg01no344_o11.b1 PHD_FILE: MSMg01no344_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:14 2005CHROMAT_FILE: MSMg01no344_o11.g1 PHD_FILE: MSMg01no344_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,246,286 - 50,246,529)(50,092,295 - 50,092,593)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGGAAT
TCACCCCTTTTCGAAAAATGTATTAAAGGGTAGTAACATTACGAAGCTTG
AGAACTACTGCTCTAGAAGAAAATTCCCCCTACTTGTGAATTCTCTTTCA
CTTCTGCCATAATTCTTTATCCTTCATCTGTATGTAGGATAGCCTTCAGT
CTATATGTAAAATATGCAGGTTTGGCTCAGTCTTCACTAGTCATTAATAC
TTTATAATACCTAGAAGAGTGCTCAGTACTAGGGGGCACTAAGGAACATT
TATAAATGGAAGAAATATTTGAATTGGTAGCACAATTCACTTATTTGCAA
CATATTTGGTTTCTACATGAGAGAGATTTAAGCAGTTCCTCTATGACTTT
AAATAGCATGGCTATGTGTATTGAAACAACAACTTATGGTGACCCTTAAT
AAGAAGTTAGTGCCATGAAAACCACTTAGAAGGCCCTCCTCCATGTAAAT
TATTCAAATGATTTGGTTCAAACATCGTAACTGACCTGTAGTAAACCTTA
TACATCTTGTATTTGAGTTTTCAGAGGCTACTCTGCTAGGTTGAGCTTTT
TCTGATTCTGTTTTTATTTCCTTACATATTGGTAGACCTACCAAGAGATT
TTTTTGAAGAATGGGGCCATGTCAGACATTCCCTGCTTAAGATTTTGGGA
AAGCCAAAATCATCTCATGCATCTAATTATCTATTTAATGACAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTGTTTTGGGGGTGGGGAAGAGGAAGAGCCTGAT
TGATGGAGGATGACCCGGCTGGAAAGGTGTGATGCTCCTGTCCCGTCCAG
ACAATGAATGACGACCAGAAAGAACACGGAGGAGCTTTCCCTCACCCAGA
ATGTACATGCAAACACTTGCTCAAGCTCAAATCCCCTGCCTGATGCACAC
AGACGACACTAGCTCCCAGTGACCAGATAGGGTTGCTTACTGCAGATTGG
AGCCCCGAAAGCTAAATCTACCACTCTGAAATCCTGTGTCTACACATCAC
TTTTGCTGAAGTGGGAGGAAAAGCCCGTGTGGCTACCACCTAAGGTGAGA
TGTGCTTGCGATTTCTTAAACCCTGCATTCCAAGGTCTTAATCAGTCTAT
CCCCAATCCTAAAGAATATATCATGGCCATTCCCTTTCCTGAGGAATTTC
ATGATAGATCTCATACCTTTATATTCTTCTTTTGACCCCTCTTCTTTCTT
GACTCTATTTCGCTAATATTTCTCGATGAGCGCTTTCCTTCTTTTAATCT
TTTTTGGATTATATTGACATTCTTCTTTTCTCTCATTTTTCTATCCTGTT
TTTTCTTTATTATTTCTCTTATACTATAATTTGCCTTTTTTTTCTTTTTT
CTTTCTCTTTCTTCTTTCTTCTCACCTTTTATCTTTATTATTATCATACA
ATCCTCGCTTCATTTTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_o11.b1 MSMg01no344_o11.b1 CHROMAT_FILE:
MSMg01no344_o11.b1 PHD_FILE: MSMg01no344_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:14 2005
         (244 letters)



>mm_chr8_50246045_50246688
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtattaaagggtagtaacattacgaagcttgagaactactgctctagaagaaaattcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtattaaagggtagtaacattacgaagcttgagaactactgctctagaagaaaattcccc 426

                                                                       
Query: 61  ctacttgtgaattctctttcacttctgccataattctttatccttcatctgtatgtagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctacttgtgaattctctttcacttctgccataattctttatccttcatctgtatgtagga 366

                                                                       
Query: 121 tagccttcagtctatatgtaaaatatgcaggtttggctcagtcttcactagtcattaata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 365 tagccttcagtctatatgtaaaatatgcaggtttggctcagtcttcactagtcattaaaa 306

                                                                       
Query: 181 ctttataatacctagaagagtgctcagtactagggggcactaaggaacatttataaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctttataatacctagaagagtgctcagtactagggggcactaaggaacatttataaatgg 246

               
Query: 241 aaga 244
           ||||
Sbjct: 245 aaga 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no344_o11.g1 MSMg01no344_o11.g1 CHROMAT_FILE:
MSMg01no344_o11.g1 PHD_FILE: MSMg01no344_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:14 2005
         (299 letters)



>mm_chr8_50092095_50092793
          Length = 699

 Score =  516 bits (267), Expect = e-151
 Identities = 291/299 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgttttgggggtggggaagaggaagagcctgattgatggaggatgacccggctggaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 201 gtgttttgggggtggggaagaggaagagcctgattgatggaggatgaccgggttggaaag 260

                                                                       
Query: 61  gtgtgatgctcctgtcccgtccagacaatgaatgacgaccagaaagaacacggaggagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gtgtgatgctcctgtcccgtccagacaatgaatgacgaccagaaagaacacgggggagct 320

                                                                       
Query: 121 ttccctcacccagaatgtacatgcaaacacttgctcaagctcaaatcccctgcctgatgc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctcacccagaatgtacatgcaaatacttgctcaagctcaaatcccctgcctgatgc 380

                                                                       
Query: 181 acacagacgacactagctcccagtgaccagatagggttgcttactgcagattggagcccc 240
           ||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 381 acacagatgagactagctcccagtgatgagatagggttgcttactgcagattggagcccc 440

                                                                      
Query: 241 gaaagctaaatctaccactctgaaatcctgtgtctacacatcacttttgctgaagtggg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagctaaatctaccactctgaaatcctgtgtctacacatcacttttgctgaagtggg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)