BAC Information

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BAC

Clone NameMSMg01-345C11
Chromosome8 (Build37)
Map Location 33,786,648 - 33,787,182
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345C11.T7 (MSMg01no345_c11.b1)MSMg01-345C11.TJ (MSMg01no345_c11.g1)
ACCAG458044AG458045
length734717
length of high quality
(start - end)
538 (38 - 575)535 (57 - 591)
definitionCHROMAT_FILE: MSMg01no345_c11.b1 PHD_FILE: MSMg01no345_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:33 2005CHROMAT_FILE: MSMg01no345_c11.g1 PHD_FILE: MSMg01no345_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGAGGAATACCGAATGGCTGAGAAGTACCTGAAAAAATGTTCCACATC
CTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGTACCTGAAAA
ATCAGTCTGGCACTTGCTCAGAAAATTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAA
AAGGACACGTGCTCCACTATGTTCATAGCAGCCTGATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGATACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTGATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGTCTAGAAACTTAGAATACCCAAGATTTAAGATACAATTT
GCAAAACACAGGAAACTTTAGAAGAATGAAGACCANAGTGTGGACACTGT
TGCCCTTCTTAGAATTGGGAACAAAACACCCCTGGGAGGAGTTACAAAAA
CAAAGTTTGGAGCTGAAATGAAAGGAGAAACCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTAAGGAAAACAGAAATGAAGTGTAGCTTGATGGATTGGGAGGG
CCATTCTCAAATGTCAGTATGTCTTGGTGACAGGGCCATCTAAAAGTCAT
TTTAAACTATGGATGTCTGCGTGTCCCTTCCAAGATTTCTAGTGTCCTGG
GTGTAGGTACACTGGGGGTCTGCCTCTCTAATAAACTCCCAGGAACATCT
CCTTGCTGGTGATTGGCGACATCTCTGTAGATGTTTATAGGAACAGCATG
ATGGTCTCTTCTTTATCCGAAGTCAGAATCTTTGGTTTTAGGACTTTTCC
GTGCTACTGTGTTCCCTCTGTCATTTCTGGTCCTAGGGCCCTGTCTCTAA
AACACTTCATAACTTTCAGTGATCCTCCAAGATTAAGAGAGGAGGAAAGG
ATAAAAAGATAAATAAAACGTGCACATTTAAAGGCTGAAATGTGCCCCTT
ATTTCATCTGGCTGTTGTCTATTTGTCGTCCAACTGGGATTACCAAGGAT
AATTGAAAATTAATAAAACCGTCTGCTGTTTGTTTTGTTCAGCCTGGAGT
GTGCTGTTGAGGCTCCCTGACATAGACCTCTCATTGCATTGTGGGAAAAC
TGAAAAAGCCTATGTGCCCTATCTAAACTAAGGTTCCCTTACTACTGGGT
TATGTTCTAACAGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_c11.g1 MSMg01no345_c11.g1 CHROMAT_FILE:
MSMg01no345_c11.g1 PHD_FILE: MSMg01no345_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:33 2005
         (535 letters)



>mm_chr8_33786261_33787195
          Length = 935

 Score = 1019 bits (527), Expect = 0.0
 Identities = 533/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaggaaaacagaaatgaagtgtagcttgatggattgggagggccattctcaaatgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ctaaggaaaacagaaatgaagtgtagcttgatggattgggagggccattctcaaatgtca 863

                                                                       
Query: 61  gtatgtcttggtgacagggccatctaaaagtcattttaaactatggatgtctgcgtgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtatgtcttggtgacagggccatctaaaagtcattttaaactatggatgtctgcgtgtcc 803

                                                                       
Query: 121 cttccaagatttctagtgtcctgggtgtaggtacactgggggtctgcctctctaataaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cttccaagatttctagtgtcctgggtgtaggtacactgggggtctgcctctctaataaac 743

                                                                       
Query: 181 tcccaggaacatctccttgctggtgattggcgacatctctgtagatgtttataggaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcccaggaacatctccttgctggtgattggcgacatctctgtagatgtttataggaacag 683

                                                                       
Query: 241 catgatggtctcttctttatccgaagtcagaatctttggttttaggacttttccgtgcta 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 catgatggtcacttctttatccgaagtcagaatctttggttttaggacttttccgtgcta 623

                                                                       
Query: 301 ctgtgttccctctgtcatttctggtcctagggccctgtctctaaaacacttcataacttt 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctgtgtcccctctgtcatttctggtcctagggccctgtctctaaaacacttcataacttt 563

                                                                       
Query: 361 cagtgatcctccaagattaagagaggaggaaaggataaaaagataaataaaacgtgcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cagtgatcctccaagattaagagaggaggaaaggataaaaagataaataaaacgtgcaca 503

                                                                       
Query: 421 tttaaaggctgaaatgtgccccttatttcatctggctgttgtctatttgtcgtccaactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttaaaggctgaaatgtgccccttatttcatctggctgttgtctatttgtcgtccaactg 443

                                                                  
Query: 481 ggattaccaaggataattgaaaattaataaaaccgtctgctgtttgttttgttca 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggattaccaaggataattgaaaattaataaaaccgtctgctgtttgttttgttca 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)