Query= MSMg01no345_h12.b1 MSMg01no345_h12.b1 CHROMAT_FILE:
MSMg01no345_h12.b1 PHD_FILE: MSMg01no345_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:55 2005
(513 letters)
>mm_chr8_90596599_90597511
Length = 913
Score = 907 bits (469), Expect = 0.0
Identities = 503/517 (97%), Gaps = 8/517 (1%)
Strand = Plus / Plus
Query: 4 ggaattccttccaagctatgtgtaagtgggaaaatgtgggccacttctccacctgtccca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattccttccaagctatgtgtaagtgggaaaatgtgggccacttctccacctgtccca 257
Query: 64 ccaactcctgtcaaatacccagtgtaaaacaactgacaaattatacctctctttacttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccaactcctgtcaaatacccagtgtaaaacaactgacaaattatacctctctttacttcc 317
Query: 124 ctgtcctaaagggtctcaaactgtataccagactggccactatatatagtatatttataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctgtcctaaagggtctcaaactgtataccagactggccactatatatagtatatttataa 377
Query: 184 tagatgtatactggccactaac--tatgtttgtatctatggccactaactacatgtg--- 238
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 378 tagatgtatactggccactaactatatgtttgtatctatggccactaactacatgtgtct 437
Query: 239 -tctgtctgtctatctatctatctatctatctatctatctatctatctatctatggacag 297
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atctatctatctatctatctatctatctatctatctatctatctatctatctatggacag 497
Query: 298 agagagaagagagagagagcatgcccagactgatcttaaactcaatcttcctgccttagc 357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agagagaaaagagagagagcatgcccagactgatcttaaactcaatcttcctgccttagc 557
Query: 358 ttcccaagtgtca-ggataattagagtgacataaactatacctagatgtcagttctacat 416
||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 558 ttcccaagtgtcaagg-taattagagtgacataaactatacctagatgacagttctacat 616
Query: 417 tttactcattattttaaaatattttctcagcaaaaaagtatcaaggactttctgtccatg 476
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 617 tttattcattattttaaaatattttctcagcaaaaaagtatcagggactttctgtccatg 676
Query: 477 acggctgctgggcaacctttcagtgtgtgttttagtg 513
|||||||||||||||||||||||||||||||||||||
Sbjct: 677 acggctgctgggcaacctttcagtgtgtgttttagtg 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_h12.g1 MSMg01no345_h12.g1 CHROMAT_FILE:
MSMg01no345_h12.g1 PHD_FILE: MSMg01no345_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:55 2005
(245 letters)
>mm_chr8_90724138_90724782
Length = 645
Score = 474 bits (245), Expect = e-138
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 caaagaaaggtccaccgagactggtcaagctatgaaggaatgaatggccaccgatgctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaagaaaggtccaccgagactggtcaagctatgaaggaatgaatggccaccgatgctct 386
Query: 61 ggaggccccactggggctccccatcccccacccatcatccccccctcccgcctgtgggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaggccccactggggctccccatcccccacccatcatccccccctcccgcctgtgggcg 326
Query: 121 tgttccccgctgtgcgggtgtgccgaccctccaagacgcaggccacgacgccagcactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttccccgctgtgcgggtgtgccgaccctccaagacgcaggccacgacgccagcactca 266
Query: 181 ccccacgactccctggttgtagttccgtcgcttccacggggtcccgctgtacacgccccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccccacgactccctggttgtagttccgtcgcttccacggggtcccgctgtacacgccccc 206
Query: 241 gccgc 245
|||||
Sbjct: 205 gccgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
