BAC Information

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BAC

Clone NameMSMg01-345I03
Chromosome8 (Build37)
Map Location 36,733,298 - 36,733,800
singlet/doubletsinglet
Overlap geneMfhas1
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1
Downstream geneLOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345I03.T7 (MSMg01no345_i03.b1)MSMg01-345I03.TJ (MSMg01no345_i03.g1)
ACCAG458315AG458316
length723770
length of high quality
(start - end)		561 (36 - 596)251 (74 - 324)
definitionCHROMAT_FILE: MSMg01no345_i03.b1 PHD_FILE: MSMg01no345_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:58 2005CHROMAT_FILE: MSMg01no345_i03.g1 PHD_FILE: MSMg01no345_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCT
GGTTCTCACAGTAGCCAAGTTGGGGTTAGGTTGTAAGAGAGTACCCACAC
TTTAGTTAGTGAAGGAGGACACCAGTCAGAATTTCTTTGGAAAGAAAAAA
AGAAACAGCTTTCAGGTACAGGCCACCTAAAAACAAAGTGCAGCTGACCA
TCTTGTCATGTGCCTAGAAGTTCACACACCCTGTAAACTAAAACACTAAG
TGTCTCAACCTGAACAGAGACTGCCCAGAGCCAGGGATTCACAAACAAAC
GTGCAAAAGACTCTGTAATGTTGACTAGTTTCTAGATCATCACACCAGTT
GTGAGTCCATGGAGTGGAGAGAGCCCTCTCTTATCCAGAAGGTATTGTTT
TGCTTTGGTTCTCTCCAGTCTCTGGCTTTTCAGATTCATTCTGACCCCTT
TGCACAATGGCCCCTAAGCACTGTGGGTAGGAGTGTGATAAAGAAGTCCT
ATTTGTAACAGGGCACTCAACAGGCATTTAACCTCTGCATTTTAACCAGA
TGTGAGATCCTGCAGTGACAGCCATCTTCTGCATTGAGATACTTCTCTGA
TGAAGTCTGAGAACTATGCCAATCTACAGGTATAGAAACACCAATTTAGA
GTGTAGCTTACTCTGATGNCTACTTATAAGAACATATTAGAAGCCTCACC
CTTATGGTCAATGAGCTCCCCCA

CGATGCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACTGAAAATGT
GGTACATCTACACATTGTAGTACTACTCAGCTATTAAAAAGATTGAATTT
TATGAAATTCTTAACCTAATGGATGGACCTTTTAAGTTTCCAACCCTGGA
GTGAAGGAAAAACACTCCCCTTTTTAATCTTTTACTTTTATTGTTTTTTA
TTGTTTCAAGTGAAATATTTAATTCTCTATATCCTAAGTCTTAACCTTTT
GAATTATATAAAATATTAATTTTTTCTTTATTCACCATTTTTTCCTTCCT
TTTAATTATTGGTATAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_i03.b1 MSMg01no345_i03.b1 CHROMAT_FILE:
MSMg01no345_i03.b1 PHD_FILE: MSMg01no345_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:58 2005
         (561 letters)



>mm_chr8_36733298_36734258
          Length = 961

 Score =  973 bits (503), Expect = 0.0
 Identities = 503/503 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctggttctcacagtagccaagttggggttaggttgtaagagagtacccaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattctttctggttctcacagtagccaagttggggttaggttgtaagagagtacccaca 444

                                                                       
Query: 65  ctttagttagtgaaggaggacaccagtcagaatttctttggaaagaaaaaaagaaacagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctttagttagtgaaggaggacaccagtcagaatttctttggaaagaaaaaaagaaacagc 384

                                                                       
Query: 125 tttcaggtacaggccacctaaaaacaaagtgcagctgaccatcttgtcatgtgcctagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttcaggtacaggccacctaaaaacaaagtgcagctgaccatcttgtcatgtgcctagaa 324

                                                                       
Query: 185 gttcacacaccctgtaaactaaaacactaagtgtctcaacctgaacagagactgcccaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttcacacaccctgtaaactaaaacactaagtgtctcaacctgaacagagactgcccaga 264

                                                                       
Query: 245 gccagggattcacaaacaaacgtgcaaaagactctgtaatgttgactagtttctagatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gccagggattcacaaacaaacgtgcaaaagactctgtaatgttgactagtttctagatca 204

                                                                       
Query: 305 tcacaccagttgtgagtccatggagtggagagagccctctcttatccagaaggtattgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcacaccagttgtgagtccatggagtggagagagccctctcttatccagaaggtattgtt 144

                                                                       
Query: 365 ttgctttggttctctccagtctctggcttttcagattcattctgacccctttgcacaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ttgctttggttctctccagtctctggcttttcagattcattctgacccctttgcacaatg 84

                                                                       
Query: 425 gcccctaagcactgtgggtaggagtgtgataaagaagtcctatttgtaacagggcactca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  gcccctaagcactgtgggtaggagtgtgataaagaagtcctatttgtaacagggcactca 24

                                  
Query: 485 acaggcatttaacctctgcattt 507
           |||||||||||||||||||||||
Sbjct: 23  acaggcatttaacctctgcattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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