Query= MSMg01no346_b10.b1 MSMg01no346_b10.b1 CHROMAT_FILE:
MSMg01no346_b10.b1 PHD_FILE: MSMg01no346_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:41 2005
(478 letters)
>mm_chr8_11570399_11571277
Length = 879
Score = 849 bits (439), Expect = 0.0
Identities = 469/485 (96%), Gaps = 11/485 (2%)
Strand = Plus / Minus
Query: 5 gaattcaaggcctgcctggtataaagatctagttccaggatagccagggctacacagaga 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaattcaaggccagcctggtataaagatctagttccaggatagccagggctacacagaga 749
Query: 65 aaccctgtcttgaaaaaaccataaccaaaccagaccaaaccaaaccagacca-------- 116
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aaccctgtcttgaaaaaaccataaccaaaccagaccaaaccaaaccagaccaaaccaaac 689
Query: 117 --aaccaaaaaaaaatgtctatagcccagaaacacaagctgtttaaacaggtgctgtggt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ccaaccaaaaaaaaatgtctatagcccagaaacacaagctgtttaaacaggtgctgtggt 629
Query: 175 ggccattccaggctgattcagaatgttcatactcagcaggaggacagcacaagccttgag 234
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 628 ggccattccaggctgattcagaatgttcatactcagcgggaggacagcacaagccttgag 569
Query: 235 tagtccctggggttttctttgtgtgctgaaaatatcattg-aaaaaaaaatcaacacttt 293
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 568 tagtccctggggttttctttgtgtgctgaaaatatcattgaaaaaaaaaatcaacacttt 509
Query: 294 agcagacactgggggaaaggtatattttgtttgtgactattgtgtgtgcaaaatggttgg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 508 agcagacactgggggaaaggtatattttgtttgtgactattgtgtgtgcaaaatggtcgg 449
Query: 354 acttacgctcttagcctcacagttggacatctttttccgtaagttctcacatatagagaa 413
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acttacgctcttagtctcacagttggacatctttttccgtaagttctcacatatagagaa 389
Query: 414 ggcagaagtaaaatttccattatagctagacttagcggctcataattagattcctaggag 473
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 388 ggcagaagtaaaatttccattatagctagacttagtggctcataattagattcctaggag 329
Query: 474 gtcta 478
|||||
Sbjct: 328 gtcta 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_b10.g1 MSMg01no346_b10.g1 CHROMAT_FILE:
MSMg01no346_b10.g1 PHD_FILE: MSMg01no346_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:41 2005
(504 letters)
>mm_chr8_11402847_11403748
Length = 902
Score = 876 bits (453), Expect = 0.0
Identities = 486/497 (97%), Gaps = 2/497 (0%)
Strand = Plus / Plus
Query: 5 cagaactttaaaaacatctggagtagggagggggctggagagatggctcggaggttaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cagaactttaaaaacatctggagtagggagggggctggagagatggctcggaggttaaga 264
Query: 65 gcactgactgttctttcagaggtcctatgttcaattcccagaaaccacatggtggctcac 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcactgactgttctttcagaggtcctatgttcaattcccagaaaccacatggtggctcat 324
Query: 125 aaccatctgtaatgggatctgatgccctcttctggtgtgtctgaggatagtgacagtgta 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 325 aaccatctgtaatgggatctgatgccctcttctggtgtatctgaggatagtgacagttta 384
Query: 185 ctcacatatataaaacaaacaaataaataataataaattaaatatatatatctggaggtg 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 ctcacatatataaaacaaacaaataaataataataaattaaaaatatatatctggaggtg 444
Query: 245 acacccccagtctgtctgtcctcaagtcatgttctcattgtctgtccacagggacctcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacccccagtctgtctgtcctcaagtcatgttctcattgtctgtccacagggacctcct 504
Query: 305 ggccgcccagggcccataggacagatgggtcccatgggagcacctggaagaccggtaagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggccgcccagggcccataggacagatgggtcccatgggagcacctggaagaccggtaagt 564
Query: 365 ccctgcacccagtaacagctcacctgtggacatttctttttcacaacactgagtgccacg 424
||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 565 ccctgcaccca-taacagctcacctgtggacatttctcttccacc-cactgagtgccacg 622
Query: 425 gagcaacaggctagttctggctagggcccctcccatcatgtacagctctttaggctccat 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 623 gagcaacaggctagttctggctagggcccctcccatcatgtacagctcttcaggctccat 682
Query: 485 attaactatggagctgg 501
||||||||||| |||||
Sbjct: 683 attaactatggggctgg 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 902
Length adjustment: 10
Effective length of query: 494
Effective length of database: 892
Effective search space: 440648
Effective search space used: 440648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
