Query= MSMg01no346_e05.b1 MSMg01no346_e05.b1 CHROMAT_FILE:
MSMg01no346_e05.b1 PHD_FILE: MSMg01no346_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:55 2005
(550 letters)
>mm_chr8_18819781_18820730
Length = 950
Score = 940 bits (486), Expect = 0.0
Identities = 532/548 (97%), Gaps = 3/548 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactatgtacaccaggttagctttgaactcacagagctccacctgccttttcct 63
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 622 ggaattcactatgtagaccaggttagctttgaactcacagagctccacttgccttttcct 563
Query: 64 cctgagtgctggcatcaaaggtgtgaaccaccaagcctggcttattatcttaaaattttc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 562 cctgagtgctggcatcaaaggtgtgaaccaccaagcctggcttattatcttaaagttttc 503
Query: 124 ctcttcctcagcaactgtgttcctttggatattggcttgtcccactgaccctttgctctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctcttcctcagcaactgtgttcctttggatattggcttgtcccactgaccctttgctctg 443
Query: 184 tcccaaggcttgcttgtgggaaggtttctacatcttcaaagtacaccgttgaattgcatt 243
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 442 tcccaaggcttgcttgtgggaaggtttctacgtcttcaaagtacactgttgaattgcatt 383
Query: 244 tgtgcctctgcccctattttagactcctgcatgtcattcaccgtgtctcaacttttgcgt 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtgcctctgtccctattttagactcctgcatgtcattcaccgtgtctcaacttttgcgt 323
Query: 304 gccttcaaaaagttacgtaaaacacattttgatgtagcccggccttgagctcactttgta 363
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 tccttcaaaaaattacgtaaaacacattttgatgtagcccggccttgaactcactttgta 263
Query: 364 ccataccagagactgaggctgacattgcatttttagctctggtgcctcgattttcccaag 423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 262 ccataccagagactgaggctgacattgcatttttagctctggtgcctcaattttcccaag 203
Query: 424 tgctgatgtgttctattttgaagatgatgctgaggagtgaacccagggcttcgcgcatgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgctgatgtgttctattttgaagatgatgctgaggagtgaacccagggcttcgcgcatgc 143
Query: 484 tagcctggcattctaccgactaacttccatgctca-gccaaaaaagcttccaaagaatag 542
| |||||||||||| ||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 142 t--cctggcattctatcgaataacttccatgctcaggcgaaaaaagcttccaaagaatag 85
Query: 543 aacgaatg 550
||||||||
Sbjct: 84 aacgaatg 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_e05.g1 MSMg01no346_e05.g1 CHROMAT_FILE:
MSMg01no346_e05.g1 PHD_FILE: MSMg01no346_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:55 2005
(541 letters)
>mm_chr8_18646626_18647566
Length = 941
Score = 1023 bits (529), Expect = 0.0
Identities = 536/541 (99%), Gaps = 5/541 (0%)
Strand = Plus / Plus
Query: 1 caggaatttggctgtgcctttagatagtctgatagaagctttgatctcaaacttcacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaatttggctgtgcctttagatagtctgatagaagctttgatctcaaacttcacttt 260
Query: 61 cgagtttaaacagcagtgattcacccaaatgacagttgatatttgtttttcttcttgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgagtttaaacagcagtgattcacccaaatgacagttgatatttgtttttcttcttgaaa 320
Query: 121 attcaacatgagtatttgttattcgtcgagttggggaattgtcacacttcctctaagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcaacatgagtatttgttattcgtcgagttggggaattgtcacacttcctctaagatg 380
Query: 181 acacactttataaaatgtccccgtaaacagtttcctgttgtttattcctgctgggtgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacactttataaaatgtccccgtaaacagtttcctgttgtttattcctgctgggtgtgc 440
Query: 241 tgagatagggtggaccccgtcaccggacagatggggtagcagacactgagcttggattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagatagggtggaccccgtcaccggacagatggggtagcagacactgagcttggattta 500
Query: 301 taacccagttgtctgctgatctgcagttactttgataaagccttcctggaaatccaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacccagttgtctgctgatctgcagttactttgataaagccttcctggaaatccaaagc 560
Query: 361 caggactggcagaggtgggctgtgctcagtggtggtgtgggactcaacagcacatgcggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggactggcagaggtgggctgtgctcagtggtggtgtgggactcaacagcacatgcggc 620
Query: 421 tttgtgaagccatttagaaaccagcagcagtatattgatgcccacagtggctgtccactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtgaagccatttagaaaccagcagcagtatattgatgcccacagtggctgtccactc 680
Query: 481 ccacgagcatgctcgttttgttttgttttgttttgttttgttttttcttgttatgtatga 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 ccacgagcatgctcgttttgttttgttttgttttgtttt-----ttcttgttatgtatga 735
Query: 541 c 541
|
Sbjct: 736 c 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
