BAC Information

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BAC

Clone NameMSMg01-346F22
Chromosome8 (Build37)
Map Location 60,044,980 - 60,045,488
singlet/doubletsinglet
Overlap geneGalnt7
Upstream geneFbxo8, EG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, LOC100040634
Downstream geneLOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346F22.T7 (MSMg01no346_f22.b1)MSMg01-346F22.TJ (MSMg01no346_f22.g1)
ACCAG458973AG458974
length761746
length of high quality
(start - end)		509 (34 - 542)421 (64 - 484)
definitionCHROMAT_FILE: MSMg01no346_f22.b1 PHD_FILE: MSMg01no346_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:03 2005CHROMAT_FILE: MSMg01no346_f22.g1 PHD_FILE: MSMg01no346_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTAAGC
ATCAGGGTAGTGAGAGAAAAATAACTGTACTCCTGCACAGAGGGGCAGCA
AAGACAGAAGAGCTCTGCTGGAAGACATGATTCCCTGGGGCCAGTCCCAA
CTTTTGCTAATCTCTAAACCCAAACTGGAAAGCCAGCACTTGCATTCCAG
TATAACGCTCCAAATATTATCAAGCAATTGTATTTAATTATCGCCATGTT
AGAAATAAAGTACTTATTGCGGTGGGAAAATTATACCTTGTGCGTATGCC
TCAGAAATCCTAGACACTCTTGAAGCGATTGGGGTGGGCTCAGGTATGTA
TATGTCAGGTAAGGACATTTGGGGATTCTTTAAATGGCTACAAGTAGACA
TCACGTTGTGGTAATGAAGGGGACCGCATTCATGAAAAACGCATCTAACT
GACTTCTCGGTGCCCTGCTGCCTGAATGCTTTTCTCACATTCAAGCCATC
AAATGCTAGCTTGCTTGTGGCAGGCACTGAGGACCACTGGGGAGAGAGCC
ACAGCTCTCTGTGCTCTTAATTTACACTAAAACCTTCCTGAAAGAAGAAT
AAGTTAGAGGCTTCCTCAGTACTGATGACATCAGTCACAGCGGTTAAAAC
ACAGGCCCCCCTAAGTTATAATTTCCCCAAAAACCATAAAACATAAAGTG
GCAATTTTTTTTTCAATCTTCGAAAACCCAATAAAAGAAATGGTAATTTT
TCTCGACTCCN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGACTTGGAATGTGGCTCAACTGGAAGCAAGCCTTC
CTTGGATGCTTAGGGCTTTGTGTTTGGGTCCTCAGAACTGTATTGAGGAG
GTAGGGGCAGGAGGGTTGGAAGCTCAAGGTCATTTCACCTAACATAGGGA
ATTCCAGGCTAGCCTGTGCTACTTAAAACTCAACACAAAATAACTGATTT
TATTTTAAAAGGTAGTTTAAAAATGCAATAACCTTCTTCTCTTTATATAT
TAAATTATATAACCTAATCAAAATGTACAAAAAAGGAAGTTGAGTTTATT
AAACGATTGAATCTTGATATACTTTGCCCAATATTAAAATTATTTTATTT
GCTTTAAATCTATTGTCAATAAAAGAGAAGAAGAAGATGAAAGGAGAAGG
AGGATGAGGAAGGAGAGGAGGAGGAGAAGGATTTTGNTNNNNNNNNNTTT
NTTNNTTTTTTTTTNTTNNTTTTTTTTTTTNTTTNTTNTTTTTTTTTTTT
TTNTTTNNNNTTTNNNTTTTTNTTTTTTTTTTTTTTTNNTTTTTTTTTNN
TTTTTTTTTTTTTTNNNTTTTTTTNTTTTTTTTTTTTNTNNTTTTTTTTT
TTTNTTTNTTTTTTTTTNTTTTTTNNTTNTTTTTTTTTNNTTTTTTTTTT
NTTTTTTTTTTTNNNNTTTTTTTNNNTTTTTTTTTTNNNTTTTTNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_f22.b1 MSMg01no346_f22.b1 CHROMAT_FILE:
MSMg01no346_f22.b1 PHD_FILE: MSMg01no346_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:03 2005
         (509 letters)



>mm_chr8_60044778_60045688
          Length = 911

 Score =  919 bits (475), Expect = 0.0
 Identities = 500/509 (98%), Gaps = 2/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattccctaagcatcagggtagtgagagaaaa--ataactgtactcctgcacagagg 60
           |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||
Sbjct: 203 cggaattccctaagcatcagggtagtgagaaaaaaagataactgtactcctgcacagagg 262

                                                                       
Query: 61  ggcagcaaagacagaagagctctgctggaagacatgattccctggggccagtcccaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggcagcaaagacagaagagctctgctggaagacatgattccctggggccagtcccaactt 322

                                                                       
Query: 121 ttgctaatctctaaacccaaactggaaagccagcacttgcattccagtataacgctccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgctaatctctaaacccaaactggaaagccagcacttgcattccagtataacgctccaa 382

                                                                       
Query: 181 atattatcaagcaattgtatttaattatcgccatgttagaaataaagtacttattgcggt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 atattatcaagcaattgtatttaattatcgtcatgttagaaataaagtacttattgcggt 442

                                                                       
Query: 241 gggaaaattataccttgtgcgtatgcctcagaaatcctagacactcttgaagcgattggg 300
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 443 gggaaaattataccttatgcatatgcctcagaaatcctagacactcttgaagcgattgga 502

                                                                       
Query: 301 gtgggctcaggtatgtatatgtcaggtaaggacatttggggattctttaaatggctacaa 360
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 503 gtgggctcaggtatgtatatgtcaggtaaggacgtttgaggattctttaaatggctacaa 562

                                                                       
Query: 361 gtagacatcacgttgtggtaatgaaggggaccgcattcatgaaaaacgcatctaactgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtagacatcacgttgtggtaatgaaggggaccgcattcatgaaaaacgcatctaactgac 622

                                                                       
Query: 421 ttctcggtgccctgctgcctgaatgcttttctcacattcaagccatcaaatgctagcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttctcggtgccctgctgcctgaatgcttttctcacattcaagccatcaaatgctagcttg 682

                                        
Query: 481 cttgtggcaggcactgaggaccactgggg 509
           |||||||||||||||||||||||||||||
Sbjct: 683 cttgtggcaggcactgaggaccactgggg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 911
Length adjustment: 10
Effective length of query: 499
Effective length of database: 901
Effective search space:   449599
Effective search space used:   449599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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