Query= MSMg01no346_j23.b1 MSMg01no346_j23.b1 CHROMAT_FILE:
MSMg01no346_j23.b1 PHD_FILE: MSMg01no346_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:22 2005
(490 letters)
>mm_chr8_17010155_17011044
Length = 890
Score = 934 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Minus
Query: 7 gaattcactttcagactttgatacagacagcaaacttgaaaacttgtttctcatttaaat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattcactttcagactttgatacagacagcaaacttgaaaacttgtttctcatttaaat 630
Query: 67 acatatcaaaggcaacccttaaggtattatttataataagctgcaaagtttttgttgtcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acatatcaaaggcaacccttaaggtattatttataataagctgcaaagtttttgttgtcc 570
Query: 127 acccaatctagtcctgcaaaaaacaatgggcaccttatgaaatccacattgagttcaatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acccaatctagtcctgcaaaaaacaatgggcaccttatgaaatccacattgagttcaatt 510
Query: 187 ttcctattattaagggaagcgggaaagtatatcaattatctattaacattttaacaaata 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcctattattaagggaagcgggaaagtatatcaattatctattaacattttaacaaata 450
Query: 247 ttagtacatgaagccttttttaaaatttaaaaaaactgtatgcggttttagaggggctct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttagtacatgaagccttttttaaaatttaaaaaaactgtatgcggttttagaggggctct 390
Query: 307 tagaaatgaagtggctattaaaaaataagggaaaaaaagcctgaaaccacctaaaatatg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagaaatgaagtggctattaaaaaataagggaaaaaaagcctgaaaccacctaaaatatg 330
Query: 367 ctctgcattaaatttaaacactccaagcctgcaggttgctctggattccagccatggcac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctctgcattaaatttaaacactccaagcctgcaggttgctctggattccagccatggcac 270
Query: 427 tctaccctgctggctctaatgaaggtaattgctgacaaggctggccttgtgccctccccg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctaccctgctggctctaatgaaggtaattgctgacaaggctggccttgtgccctccccg 210
Query: 487 aaa 489
|||
Sbjct: 209 aaa 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_j23.g1 MSMg01no346_j23.g1 CHROMAT_FILE:
MSMg01no346_j23.g1 PHD_FILE: MSMg01no346_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:22 2005
(447 letters)
>mm_chr8_16843537_16844384
Length = 848
Score = 808 bits (418), Expect = 0.0
Identities = 444/460 (96%), Gaps = 13/460 (2%)
Strand = Plus / Plus
Query: 1 tcttatctccaagcttcctggatcagaactctcaaaagcctcttatcgctaagcctcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcttatctccaagcttcctggatcagaactctcaaaagcctcttatcgctaagcctcctt 248
Query: 61 tgctctctgctctcaaggaaatctcttaagatcattgtttaaactttctgtgttcaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgctctctgctctcaaggaaatctcttaagatcattgtttaaactttctgtgttcaaact 308
Query: 121 tgctcagatcgccctgatgatg------------ctgctgcaacagcaagcggcccttgg 168
|||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 309 tgctcagatcgccctgatgatgacgacgatgatgctgctgcaacagcaagtggcccttgg 368
Query: 169 ccagctcctcaccctagaggctgcagctgctggttagcctatttcatatgtaaaaaaa-t 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 369 ccagctcctcaccctagaggctgcagctgctggttagcctatttcatatgtaaaaaaaat 428
Query: 228 aaacaggcttgccttttccttgatccactaggttttctggtgagaaaggcagactcgaag 287
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 429 aaacaggcttgccttttccttgatccactaggttttctgctgagaaaggcagactcgaag 488
Query: 288 agttctctaccttgctgaactgacaggcttcatgctgaggaggacaaactcacaaaacag 347
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acttctctaccttgctgaactgacaggcttcatgctgaggaggacaaactcacaaaacag 548
Query: 348 gtttcaacatcaagacaaactcaagctaccatgctggtggtattaactaaaaacttgctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtttcaacatcaagacaaactcaagctaccatgctggtggtattaactaaaaacttgctt 608
Query: 408 ttactattcctttaaataaaacaaacggacttctctcagt 447
||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttactattcctttaaataaaacaaacggacttctctcagt 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 848
Length adjustment: 10
Effective length of query: 437
Effective length of database: 838
Effective search space: 366206
Effective search space used: 366206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
