Query= MSMg01no347_f15.b1 MSMg01no347_f15.b1 CHROMAT_FILE:
MSMg01no347_f15.b1 PHD_FILE: MSMg01no347_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:18 2005
(550 letters)
>mm_chr8_50018500_50019449
Length = 950
Score = 1048 bits (542), Expect = 0.0
Identities = 545/546 (99%)
Strand = Plus / Minus
Query: 5 gaattctttcgctttttcatcctgtgaaggaggacaggatagattttattattattatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaattctttcgctttttcatcctgtgaaggaggacaggatagattttattattattatta 767
Query: 65 ttttaataataaaattgtagttggtttgttacaaccgtagcagtagccactattgtttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttttaataataaaattgtagttggtttgttacaaccgtagcagtagccactattgtttct 707
Query: 125 ttttaatatcccttccaggccctgatttttacctttcccctaagggtgtctcagcaatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttttaatatcccttccaggccctgatttttacctttcccctaagggtgtctcagcaatag 647
Query: 185 tgataagagagccctttaataagtgctcttgtgagcatactcatacattcttataagctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tgataagagagccctttaataagtgctcttgtgagcatactcatacattcttataagctt 587
Query: 245 ggtgggtaattaatcaaaactacgtgctgcaagccatctcccaaacgtggggtatctctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggtgggtaattaatcaaaactacgtgctgcaagccatctcccaaacgtggggtatctctt 527
Query: 305 ccttagacctcggtttaggcaatggtgagggggttttattgtcgtcatcgttgttgtttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ccttagacctcggtttaggcaatggtgagggggttttattgtcgtcatcgttgttgtttt 467
Query: 365 attatgtttttctattgccataaaagcagttaatagaagctagattttggtaatttacga 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 466 attatgtttttctattgccataaaagcagttaatagaaggtagattttggtaatttacga 407
Query: 425 tcacacatttcctcaatggctgtccttgtaagatccttaacaaagagtctcggtattata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcacacatttcctcaatggctgtccttgtaagatccttaacaaagagtctcggtattata 347
Query: 485 ttttacacaccacatttgaaacaacggcagcccgggaagtgaacatgcaatgtttacctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttttacacaccacatttgaaacaacggcagcccgggaagtgaacatgcaatgtttacctg 287
Query: 545 tagact 550
||||||
Sbjct: 286 tagact 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_f15.g1 MSMg01no347_f15.g1 CHROMAT_FILE:
MSMg01no347_f15.g1 PHD_FILE: MSMg01no347_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:18 2005
(528 letters)
>mm_chr8_49863165_49864094
Length = 930
Score = 963 bits (498), Expect = 0.0
Identities = 520/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Plus
Query: 1 agacactagggaagagtgataaggagtaatgaatacacgctcagggcctgtgagaggaga 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacactggggaagagtgataaggagtaatgaatacacgctcagggcctgtgagaggaga 260
Query: 61 aaacaggcgagcgactgtttaaaacgagttagaaagggaagcacattgtgaggggaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaggcgagcgactgtttaaaacgagttagaaagggaagcacattgtgaggggaatct 320
Query: 121 tttttt--ctattttgatatgatgaattaaagataagcacttagaatccatgtaaatgct 178
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttctattttgatatgatgaattaaagataagcacttagaatccatgtaaatgct 380
Query: 179 ttagcaattcagaccattgtggagattttccagagattgagaggcataggctacagtata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttagcaattcagaccattgtggagattttccagagattgagaggcataggctacagtgta 440
Query: 239 aatgtagccatcaatcccaaaggatgtgacaacacaggagggtttgttggggcaagcagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtagccatcaatcccaaaggatgtgacaacacaggagggtttgttggggcaagcagg 500
Query: 299 ggcaggaacaggggagaactgggggagggggtagaagggatcagaaattctgtaaggaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaggaacaggggagaactgggggagggggtagaagggatcagaaattctgtaaggaca 560
Query: 359 acagctactgaaaagcattggtgagtgagtgtgtgtgcgtatgcctgtgtgtctgtgtgt 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 acagctactgaaaagcattggtgagtgagtgtgtgtgtgtatgcctgtgtgtctgtgtgt 620
Query: 419 ttctgtgtgactgtgtgtagctgtgtgtgtgtttgtctgtgtgtgtttatctgtgtgttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgtgtgactgtgtgtagctgtgtgtgtgtttgtctgtgtgtgtttatctgtgtgttt 680
Query: 479 gtctctctgcgcgctcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 526
|| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 681 gtttctctgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgt 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 930
Length adjustment: 10
Effective length of query: 518
Effective length of database: 920
Effective search space: 476560
Effective search space used: 476560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
