Query= MSMg01no347_j04.b1 MSMg01no347_j04.b1 CHROMAT_FILE:
MSMg01no347_j04.b1 PHD_FILE: MSMg01no347_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:35 2005
(366 letters)
>mm_chr8_67005371_67006140
Length = 770
Score = 638 bits (330), Expect = 0.0
Identities = 356/366 (97%), Gaps = 4/366 (1%)
Strand = Plus / Plus
Query: 5 gaattccagggattcggtgccaagatcgtggtttgggtacctgattcatctgtttctttc 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagggaagcggtgccaagatcgtggtttgggtacctgattcatctgtttctttc 264
Query: 65 tagttcctgataaataacctgattttctttccttcttccctcctaaagcttgactgggag 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 tagttcctgataaataacctgattttctttccttcttccctcctaaagcttgacagggag 324
Query: 125 aaagatccttttgttactctatcagatcgtagtatatcataaggtgatctttaactgtat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatccttttgttactctatcagatcgtagtatatcataaggtgatctttaactgtat 384
Query: 185 cacctcatggctgttattttttaatttttcagttctccaacagtttagtcagtgacttgt 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 385 cacctcatggctgttattttttaatttttcagttctccaacagtttagccagttacttgt 444
Query: 245 ---aaaattttcctttaaagaaaatactatagtgtttacatttatgataactccatattg 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtaaaattttcctttaaagaaaatactatagtgtttacatttatgataactccatattg 504
Query: 302 tgcaaccagttgtaaacagtctcctttcttgctactgttttattctaaattctatttttt 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcaaccagttgtaaacagtttcctttcttgctactgttttattctaaattctatttttt 564
Query: 362 -aagag 366
|||||
Sbjct: 565 taagag 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 770
Length adjustment: 9
Effective length of query: 357
Effective length of database: 761
Effective search space: 271677
Effective search space used: 271677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_j04.g1 MSMg01no347_j04.g1 CHROMAT_FILE:
MSMg01no347_j04.g1 PHD_FILE: MSMg01no347_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:35 2005
(393 letters)
>mm_chr8_67128100_67128892
Length = 793
Score = 727 bits (376), Expect = 0.0
Identities = 390/396 (98%), Gaps = 3/396 (0%)
Strand = Plus / Minus
Query: 1 aatatccatgccttctgtagtaggttcaagtttgataaacagataaacttaggcctatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aatatccatgccttctgtagtaggttcaagtttgataaacagataaacttaggcctatat 729
Query: 61 tttgtatttttagattgatactaaaatcacatgtgttggcacatgccatgcctgtaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tttgtatttttagattgatactaaaatcacatgtgttggcacatgccatgcctgtaaatt 669
Query: 121 cagcatttcagaggtggaggcatgaagatcaagattttaaggttaacatcagctatctag 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 668 cagcatttcagaggtggaggcatgaagatcaagattttaaggctaacatcagctatctag 609
Query: 181 caagtttgaggttaatgtggg---aaaagggggccttgtgtcaaaatacacaaaccaaaa 237
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 608 caagtttgaggttaatgtggggaaaaaagggggccttgtgtcaaaatatacaaaccaaaa 549
Query: 238 caaaacccagcaaaaacaaaactgattgatatagttggagagtgaaggtgaaaatagaga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 caaaacccagcaaaaacaaaactgattgatatagttggagagtgaaggtgaaaatagaga 489
Query: 298 tgtagtttcaactggaaggcaaagtggacacacacattttgtaaaaaagaaaagtctctt 357
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtagtttcaactggaaggcaaagcggacacacacattttgtaaaaaagaaaagtctctt 429
Query: 358 agggcccttggtcctgtgaaggttctatgtcccagt 393
||||||||||||||||||||||||||||||||||||
Sbjct: 428 agggcccttggtcctgtgaaggttctatgtcccagt 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
