BAC Information

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BAC

Clone NameMSMg01-347O20
Chromosome8 (Build37)
Map Location 101,959,357 - 102,147,506
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik
Downstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347O20.T7 (MSMg01no347_o20.b1)MSMg01-347O20.TJ (MSMg01no347_o20.g1)
ACCAG460149AG460150
length782736
length of high quality
(start - end)		472 (47 - 518)509 (84 - 592)
definitionCHROMAT_FILE: MSMg01no347_o20.b1 PHD_FILE: MSMg01no347_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:03 2005CHROMAT_FILE: MSMg01no347_o20.g1 PHD_FILE: MSMg01no347_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,147,202 - 102,147,506)(101,959,357 - 101,959,865)
sequence
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCTTGCTCCTGCGTGCAAGGCTTGTTTACTAGTTAGGCACAG
CAGAGGCCTGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT
CTCCTCAGAGATTACTGGCGGCACACATACGATTGCTCGCAGCACATACC
GGCTCTCCACATAGAATGTGTGTTCCTTGAATGCAGAAGGCTCTAAATTC
ATTCCCCATATGTAGAGGGTGTAGTAGAGAACACTTCTAAGGCCAATCTC
AGCTACACACATTAGTCTAGACTGGCCTGGGCTAGAGACTTATTATCAAA
AATATATAATAATAATTTTTAAAAGATCATTGCCATTAACGACCATTAAA
TTATTTGATTTTATAATGAACCTCTCCCCTACATTGACTAAATGTAGAAC
ATTAGAAATAAACTAGAAAATGGTTGTCTGATCACTGAAGATATTTACAC
TGGATGGGGGACAAAGCTTGTTTCACTCACCTCCCAGTGCTTAATTGGAT
TGATGAAATTCATGCCCACTTCAGGTGAAAAAAATTTTTGAACGACCTGA
ACATTACATTCTCAAGTATAAAGCGAATCTTTTTATTTTCCATTCCAGCA
CCGGTGAGAAAAAAAAAACACTTCCCTCCCATGCCCCATTTTAAGCCGGG
CTCCCCCTCTATAACCCCCCAAACTATTGTGAATTCCCATGGCCCCCCTT
ACTGCGCTTTATCCCCTTTCTCTAAGCCCCCC

NCCCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAAGCTGAGATAAC
TAAGATGACGGATTGACGAGTGAGAAAGAAACAGACCCAAACAGAGACTG
ATCTAGCTTAGTAGACACGAAGAAAAATGGAATTGGAAGGAAGGATAGAT
TGACAGAGCCATTATGTAAGTTAATTTGCACTGAGACACCCGCCTCATTC
TCAGTGTTACCTGGCTTTCAATCTGCATGAGAACCTTGTCCTGCAGACAG
AGAGACAGGTTCAGGGTGGATTATATAATAAGCCAAGTGAAGAAGAGCAT
CTCCCAGTATGTCTGCAAAAATACTTCAATTTCAAAAATGATTATTAAAA
GCCACAAGGAAGGCAGAGATAACGCCGCTGAAACATTGACTTACTGATCA
AAAGAGACACTAATACGTGCTCCTTAAGGGAAACTGTAAGATTTTAACAT
GGGTACAAGCAAATCCTCTTGCTCCTTTCTCCTTCTGCACTGTCACAGAG
ATACAGTCTTTGATGCCTTCTGCTGCTTCTCAGCTTTTGTGAAAATACTT
TGTGTCATTTGTGCTAATTTCTGTGTTCTACTCTGTCCTTTGGTCCCTCT
TTTCTTCTTTTTTTCTCCTACCTCTATTTTGACAAACCTACTTTTTCCGT
ATAGCCGCATTATTTTCCCCCCCCCTTTGTTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_o20.b1 MSMg01no347_o20.b1 CHROMAT_FILE:
MSMg01no347_o20.b1 PHD_FILE: MSMg01no347_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:03 2005
         (472 letters)



>mm_chr8_102147010_102147881
          Length = 872

 Score =  582 bits (301), Expect = e-170
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 166 tagaatgtgtgttccttgaatgcagaaggctctaaattcattccccatatgtagagggtg 225
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 497 tagaatgtgtgttccttgaatgcagaaggctctaaattcattccccatatgtagagcgtg 438

                                                                       
Query: 226 tagtagagaacacttctaaggccaatctcagctacacacattagtctagactggcctggg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagtagagaacacttctaaggccaatctcagctacacacattagtctagactggcctggg 378

                                                                       
Query: 286 ctagagacttattatcaaaaatatataataataatttttaaaagatcattgccattaacg 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctagagacttattatcaaaaatatataataataatttttaaaagatcattgccattaacg 318

                                                                       
Query: 346 accattaaattatttgattttataatgaacctctcccctacattgactaaatgtagaaca 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 accattaaattatttgattttataatgaacctctcccctacattgactaaatgtagaaca 258

                                                                       
Query: 406 ttagaaataaactagaaaatggttgtctgatcactgaagatatttacactggatggggga 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttagaaataaactagaaaatggttgtctgatcactgaagatatttacactggatggggga 198

                
Query: 466 caaag 470
           |||||
Sbjct: 197 caaag 193


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_o20.g1 MSMg01no347_o20.g1 CHROMAT_FILE:
MSMg01no347_o20.g1 PHD_FILE: MSMg01no347_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:03 2005
         (509 letters)



>mm_chr8_101959157_101960065
          Length = 909

 Score =  946 bits (489), Expect = 0.0
 Identities = 504/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaagctgagataactaagatgacggattgacgagtgagaaagaaacagacccaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaagctgagataactaagatgacggattgacgagtgagaaagaaacagacccaaaca 260

                                                                       
Query: 61  gagactgatctagcttagtagacacgaagaaaaatggaattggaaggaaggatagattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagactgatctagcttagtagacacgaagaaaaatggaattggaaggaaggatagattga 320

                                                                       
Query: 121 cagagccattatgtaagttaatttgcactgagacacccgcctcattctcagtgttacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagccattatgtaagttaatttgcactgagacacccgcctcattctcagtgttacctg 380

                                                                       
Query: 181 gctttcaatctgcatgagaaccttgtcctgcagacagagagacaggttcagggtggatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttcaatctgcatgagaaccttgtcctgcagacagagagacaggttcagggtggatta 440

                                                                       
Query: 241 tataataagccaagtgaagaagagcatctcccagtatgtctgcaaaaatacttcaatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataataagccaagtgaagaagagcatctcccagtatgtctgcaaaaatacttcaatttc 500

                                                                       
Query: 301 aaaaatgattattaaaagccacaaggaaggcagagataacgccgctgaaacattgactta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaatgattattaaaagccacaaggaaggcagagataacgccgctgaaacattgactta 560

                                                                       
Query: 361 ctgatcaaaagagacactaatacgtgctccttaagggaaactgtaagattttaacatggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgatcaaaagagacactaatacgtgctccttaagggaaactgtaagattttaacatggg 620

                                                                       
Query: 421 tacaagcaaatcctcttgctcctttctccttctgcactgtcacagagatacagtctttga 480
           ||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||||||
Sbjct: 621 tacaagcaaatcctcttgctcctttctccttatgcattgccacagagatgcagtctttga 680

                                        
Query: 481 tgccttctgctgcttctcagcttttgtga 509
           |||||||||||| ||||||||||||||||
Sbjct: 681 tgccttctgctgattctcagcttttgtga 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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