Query= MSMg01no347_p18.b1 MSMg01no347_p18.b1 CHROMAT_FILE:
MSMg01no347_p18.b1 PHD_FILE: MSMg01no347_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:08 2005
(235 letters)
>mm_chr8_11520125_11520759
Length = 635
Score = 408 bits (211), Expect = e-118
Identities = 226/231 (97%)
Strand = Plus / Minus
Query: 5 gaattcttaccatgtcccaaggcggtcatggaacccaggattagggaccggccaagcggc 64
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 gaattcttaccatggcccaaggcggtcatggaacccaggattagggactggccaagcggc 376
Query: 65 ctcctactgactctgggaagttgatgaaggtggaagagttgtggggaggcagaccagaaa 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 375 ctcctactgactctgggaagttgatgaaggtggaagagttgaggggaggcagaccagaaa 316
Query: 125 cagctctcctcaacctgaggagtcgcatcaaaggtttttttcactgtgcctgggagccca 184
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 315 cagctctcctcaacttgaggagtcacatcaaaggtttttttcactgtgcctgggagccca 256
Query: 185 cggggagcccagagagacatcatcctgtgcactcctgtggggggtgatggg 235
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cggggagcccagagagacatcatcctgtgcactcctgtggggggtgatggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no347_p18.g1 MSMg01no347_p18.g1 CHROMAT_FILE:
MSMg01no347_p18.g1 PHD_FILE: MSMg01no347_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:08 2005
(462 letters)
>mm_chr8_11351425_11352286
Length = 862
Score = 857 bits (443), Expect = 0.0
Identities = 458/463 (98%), Gaps = 2/463 (0%)
Strand = Plus / Plus
Query: 1 ataagagagtccctgcaggacaggtgagatggctggaagggcccatggcggaactggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagagagtccctgcaggacaggtgagatggctggaagggcccatggcggaactggact 260
Query: 61 gaggaactggactgacgtctaagctgcctcccggtgctgtttggccctcagttcaggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggaactggactgacgtctaagctgcctcccggtgctgtttggccctcagttcaggaga 320
Query: 121 catg-gtgctccaactgatattgctagtttctacaattaaatgcagggacagccccaacc 179
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ca-gagtgctccaactgatattgctagtttctacaattaaattcagggacagccccaacc 379
Query: 180 tccagactaggaagcctgtcggatcaaattgaaacctttaaaatcatttcaactattcat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccagactaggaagcctgtcggatcaaattgaaacctttaaaatcatttcaactattcat 439
Query: 240 ttatatacagggacttggcaagttgctctaaaatcaaaattaaaaataccctgtgagtcg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttatatacagggacttggcaagttgctctaaaatcaaaattaaaaataccctgtgagtcg 499
Query: 300 gcagctggagaataagagcataggtctttcccttctcaattgaagccttcccgacgcgtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 gcagctggagaataagagcataggtctttcccttctcaattgaagccttcccgacacgtt 559
Query: 360 cccaataactcctgagtgaattgttggtgaatgagaggcaactgccaagataattgtcta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccaataactcctgagtgaattgttggtgaatgagaggcaactgccaagataattgtcta 619
Query: 420 gctgggttattgttatatgacccatccaggctcgtgcctcagt 462
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 gctgggttatggttatatgacccatccaggctcgtgcctcagt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
