Query= MSMg01no348_h12.b1 MSMg01no348_h12.b1 CHROMAT_FILE:
MSMg01no348_h12.b1 PHD_FILE: MSMg01no348_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:46 2005
(674 letters)
>mm_chr8_55302634_55303707
Length = 1074
Score = 1207 bits (624), Expect = 0.0
Identities = 659/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Minus
Query: 5 gaattcc-catgaagaaagttgaccactgattagaagcaggtctctggggtaagacctga 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 gaattccacatgaagaaagttgaccactgattagaagcaggtctctggggtaagacctga 992
Query: 64 gagtggcctctagctgctgtgagtgaccccaggccaagaaccaggaagaacaggcaatcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 991 gagtggcctctagctgctgtgagtgaccccaggccaagaaccaggaagaacagccaatcc 932
Query: 124 atcttatttcagctagaaaagtaagtcctccaactgtgtgaaggagcttcggaaggtttc 183
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 931 atcttacttcagctagaaaagtaagtcctccaactgtgtgaaggagcttcggaaggattc 872
Query: 184 ctgggaacttccagtctggctatgacacaggaatacaataaccaaatttctcatgtacaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 871 ctgggaacttccagtctggctatgacacaggaatacaataaccaaatttctcatatacaa 812
Query: 244 gagtatcagataataagcacatgcattttaatatgttaaatatctgtaatttgttatgca 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 811 gagtatcagataataagcacatgcattttaatatgttaaatttctgtaatttgttatgca 752
Query: 304 gcacaaaaataaaatgctaacacattgagataatggtcaaatgaatcttgcaataaactt 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gcacaaaaataaaaagctaacacattgagataatggtcaaatgaatcttgcaataaactt 692
Query: 364 aacaagtgaaacactttgctgactctgatacctgaatcactttcttattcttcctattct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aacaagtgaaacactttgctgactctgatacctgaatcactttcttattcttcctattct 632
Query: 424 gaggctgtgtcttgacctggaaggctttccaatatttaagcccactgatctatgtcaaat 483
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 631 gaggctgtgtcttgacctggaaagccttccaatatttaagcccactgatctatgtcaaat 572
Query: 484 aagaatagtgaattaattctgttacctttggtttctaaaccattgtttctttacaaagag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aagaatagtgaattaattctgttacctttggtttctaaaccattgtttctttacaaagag 512
Query: 544 agttgaaggccatctaanatacatctcctaagtgcagaaatattaagtcatgtgctttgt 603
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agttgaaggccatctaaaatacatctcctaagtgcagaaatattaagtcatgtgctttgt 452
Query: 604 gtgtatacatgtgttttatgtacatgtttgttggaggtgggaacacatacctatgcatgc 663
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttgtatacgtgtgttttatgtacatgtttgttggaggtgggaacacatacctatgcatgc 392
Query: 664 acatggaagat 674
|||||||||||
Sbjct: 391 acatggaagat 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_h12.g1 MSMg01no348_h12.g1 CHROMAT_FILE:
MSMg01no348_h12.g1 PHD_FILE: MSMg01no348_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:46 2005
(552 letters)
>mm_chr8_55172115_55173066
Length = 952
Score = 1033 bits (534), Expect = 0.0
Identities = 546/550 (99%)
Strand = Plus / Plus
Query: 1 tcatgtttctagtgtggacactgccctggtagcttttggaggtaggatttgtgtcatcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgtttctagtgtggacactgccctggtagcttttggaggtaggatttgtgtcatcta 260
Query: 61 caggtttttagtagactttattttgatatttactttaccttaaatcttaatttccaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtttttagtagactttattttgatatttactttaccttaaatcttaatttccaaatg 320
Query: 121 atctttttccttccacgtaaagtttatggtcttacgtggcgaaaggtccattcaagcttg 180
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 321 atctttttccttccacgtaaagtttatggtcttatgtggcaaaaggtccattcaaacttg 380
Query: 181 cttttcctctgctgcagaagacctgtaccttgctttgaactcggcaaaacagtgcctaga 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttcctctgctgcagaagccctgtaccttgctttgaactcggcaaaacagtgcctaga 440
Query: 241 agtcatcatcatcatttgaaacttcttgcagtctcataacagccaaaagcagaactgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcatcatcatcatttgaaacttcttgcagtctcataacagccaaaagcagaactgcct 500
Query: 301 ggatagagatttaaaccaggcaaaggggtatgggctctgtggtacttcccgaatccttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatagagatttaaaccaggcaaaggggtatgggctctgtggtacttcccgaatccttac 560
Query: 361 catggttaaccacactcactcacaccctgccagtggtccacactccctgtaggacaacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catggttaaccacactcactcacaccctgccagtggtccacactccctgtaggacaacac 620
Query: 421 aggttagcttctttgcaaataaggataacaacaaagtgcctcactatatcactgaactta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggttagcttctttgcaaataaggataacaacaaagtgcctcactatatcactgaactta 680
Query: 481 aagagtctatgtagataagtgactgagaaatggctggatcagcactattactgacatatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagagtctatgtagataagtgactgagaaatggctggatcagcactattactgacatatg 740
Query: 541 cttagctttc 550
||||||||||
Sbjct: 741 cttagctttc 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
