BAC Information

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BAC

Clone NameMSMg01-348H22
Chromosome8 (Build37)
Map Location 60,021,152 - 60,021,554
singlet/doubletsinglet
Overlap geneGalnt7
Upstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012
Downstream geneLOC100040634, LOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348H22.T7 (MSMg01no348_h22.b1)MSMg01-348H22.TJ (MSMg01no348_h22.g1)
ACCAG460578AG460579
length780765
length of high quality
(start - end)
---405 (72 - 476)
definitionCHROMAT_FILE: MSMg01no348_h22.b1 PHD_FILE: MSMg01no348_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:48 2005CHROMAT_FILE: MSMg01no348_h22.g1 PHD_FILE: MSMg01no348_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTGGCTTTTGCTTTTGTGGGGGGGGGGGGGGGGGGGGGGTCGGGGGGG
GTTGGGGGGGGGGGTGGGGGGGGGGGGTGGGTGGGGNCGTTCTGTGTTGG
NNNNNNNNNNNNNATGNNNCGTTTTGTTATTTTNNNATNNNNNNNNNTGN
NNTTGGNNNTTGNNNNNNNNTCGGGGNTTGGGGGTTGGGTGGTGNNGGGG
GGGGGGGGGGGGGGGNNNNNNNNNGGGGGCTTGNNNNNGGGGTGGGGCTG
GGTGGGGGGGGTTGGGGGCGGGGGGTGTGGTCGGGGGGGGGGTGGGTGTG
GGTGTGTGTGGGGGTGTGGTGTGTGGGGGTGGGGGGTGGTGTGGTGTTTG
TGGGGGTGTGTGTGTGGTGGGGGGGTGGGGGGGGCTGGGGAAGGGGGGGG
GGGGGGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTCCGGTTTTT
TNNNNCGNNNNNNNNNCCCCCGGCCCNNNNCCCCGCCCCCCGCCCCGCCC
CCCGCCGGCTTNNNCTCGNNTCGCCCGNNNNNNNTCGGTGGGCCGTGGGG
TGNNCTGTGGTCGGGGTTTGGGGCGCTGNNNCCAANNATTGTTGTTNNNN
NNNNNNNNNNNNNNNNNNNNCCCCGGCCGGCGGGCCTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAAGCTGTTTTTGGGGGGGGCCTTNNNNNNNNNNN
NNNNNNNNCTCCCCCCTCCGCCCGCGCGGGGGGCTGGGGGNNNNNNNNNN
NNNNNNNNNNNCCTCTTCTCTGTTCCGCTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCAAAGCGCTGAGGCTGCAAGGAGTAAA
AGCTCTGTCGGGATCTGAGGGGACAGACAGCTCCAGTTCTTACAGGGAGG
TTTCAGCAGGGCCAGAGGGTTAATAGGTTAGCAGCAACCGGAGAAAGGGG
GGAGGTAGGTAAGCGACTTAGTGATTACCGATACGGCTCAGTTTTTGTCT
TTCTCAGTCTCTTCTCTCGAGAGGTCAGAGGCACCCGTTTCCAGAGCATA
CTCCAGTCCCATGCTCCTCGGGCATACCCATCTTCATCACCACCCCCTTG
GGGTATAATTTCATATGTGTTGCCGCTTATGACATCTATAATCGGCACAG
TGCAAATGGTTCTGTGTTGTGTTGATGATGCAGCAAGGTCAAATGGAAAC
ATATGTATGGACCCACATAGTTACACGAGTTCATAGGGAAGGAAAAAAAA
GAGGACTTAGGTAAACATTCAACATTAAAAAAAAGTATAGTAATACTCCT
TTATCGATAAGGCTCAGTTTTATGCTTTTCTTTTGGGCCTTTCCTTGGGG
CTTAATGGGAAACGGTTCCCAAAAATAATCCAGTCCCCGTGCCCTCTGGG
AAAAACTCTTTCTTCCCCCCCTGGTGGGGTTTCCGGGGAAAATTTTTCCC
CGGCCTGGTTCTTTCTATCGGCCCCTTTTTTTTTTCTCTTATTCTTTTTC
CCAAACCTATCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_h22.g1 MSMg01no348_h22.g1 CHROMAT_FILE:
MSMg01no348_h22.g1 PHD_FILE: MSMg01no348_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:48 2005
         (405 letters)



>mm_chr8_60020952_60021754
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 401/405 (99%), Gaps = 2/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaaagcgctgaggctgcaaggagtaaaagctctgtcgggatctgaggggacagacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaaagcgctgaggctgcaaggagtaaaagctctgtcgggatctgaggggacagacagc 260

                                                                       
Query: 61  tccagttcttacagggaggtttcagcagggccagagggttaataggttagcagcaaccgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tccagttcttacagggaggtttcagcagggccagagggttaataggttagcagcaaccag 320

                                                                       
Query: 121 agaaaggggggaggtaggtaagcgacttagtgattaccgatacggctcagtttttgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaggggggaggtaggtaagcgacttagtgattaccgatacggctcagtttttgtctt 380

                                                                       
Query: 181 tctcagtctcttctctcgagaggtcagaggcacccgtttccagagcatactccagtccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcagtctcttctctcgagaggtcagaggcacccgtttccagagcatactccagtccca 440

                                                                       
Query: 241 tgctcctcgggcatacccatcttcatcaccacccccttggggtataatttcatatgtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcctcgggcatacccatcttcatcaccacccccttggggtataatttcatatgtgtt 500

                                                                       
Query: 301 gccgcttatgacatctataatcggcacagtgcaaatggttctgtgttgtgttgatgatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccgcttatgacatctataatcggcacagtgcaaatggttctgtgttgtgttgatgatgc 560

                                                        
Query: 361 agcaaggtcaaatggaaacatatgtatggacccacatagttacac 405
           |||||| ||||||||||||||  ||||||||||||||||||||||
Sbjct: 561 agcaagatcaaatggaaacat--gtatggacccacatagttacac 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 803
Length adjustment: 9
Effective length of query: 396
Effective length of database: 794
Effective search space:   314424
Effective search space used:   314424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)