BAC Information

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BAC

Clone NameMSMg01-348I08
Chromosome8 (Build37)
Map Location 72,522,009 - 72,684,382
singlet/doubletdoublet
Overlap geneLOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b
Upstream geneLOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a
Downstream geneTmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348I08.T7 (MSMg01no348_i08.b1)MSMg01-348I08.TJ (MSMg01no348_i08.g1)
ACCAG460597AG460598
length721749
length of high quality
(start - end)		546 (40 - 585)393 (72 - 464)
definitionCHROMAT_FILE: MSMg01no348_i08.b1 PHD_FILE: MSMg01no348_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:50 2005CHROMAT_FILE: MSMg01no348_i08.g1 PHD_FILE: MSMg01no348_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,522,009 - 72,522,548)(72,683,990 - 72,684,382)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ACTATTCCCTGATTAACTCTTGGTTTCTCCATCTCCATAATTTCTCTGCT
AGATAGGAACTTTCCAAAACCCTTTCTGCTTCCCAACCACTTCCAGATAA
AATCTAATCTGTCATCCCAAATTTAACACATCATTTGGCAAAAGTTAAAG
CAAAAAGAGCTTCAACTATCTTCCCCCATTTTAAAAGTATTTATATTATG
TGACGGTTGCTTTGCTTGTCTGAACCAAGTACGGTGTCCCCACTGTATGC
CAGAAGAAGGCATCAGATTCCCTGGAACTGGAGTCACAGACAATTATGAA
CTGCTATGTAGGGTCTAGGAATCGAACCTGGACTAGAAAAGCAGCCAAGT
GCTCTTAACCTCTGAGCCATCCTTCCAGTTCTGTCCCTTTTTAAGCAGGA
TCTCATGTAGCCCAGGTGGCCTTAAATGTCCTCCAGTTACAAGTAAGGCC
TTGAACTCCTGATCCTCAGGCATAGACATCCCAAGTATGACAGGTATGTG
CCATCACACCCAGTTTCTGCAATGCTTGTGCTACTCTTGTAGCTTATTAG
TGGAACTTCATCTGGAGCCCCCTCTTATTTTCTTCAGTAGAGTCTCTTGT
TGCCCAGACTGATATCAAAATCCTTCCTTCTGACGCCATCTTTCCTTAGC
CAAAATGGCCAGTAGTGTTCT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGACTGGCCAGGGCTACATAGTGAGACC
CTATCTAAAGAATTAAAGTATGAAGAGTGGTTGAGGAAGACCCCTGCCCC
CACGGTGACCTCTGGCCTCCACACAACACAAGAGAGAAAGCTGAGGCAGA
GACGACCCCGTTCCCCCTCCCCCCAGCTCATCTACACACTTCCTCTTAGA
CTTCCCCAGCAGACACCTTGCCCAGAAATACATGAAAGAATGCAAATCTT
CGATCACTCAGCTCGTTCTAGAGACGCTTGTGGCCCAGGTGTGGCGTGGA
GTGCGGAGGCGGCCGCCAGGGCTCAGCAGACCTATTTGTACTTCTATGCA
AATTACCCAGCCACAAACGGACCCCCCTGCCTCAGCTCCAGATGTTGGGG
TGATCGGAATGTGGGGAGGAGGGGGCAGTTTATTCTTTATATGTTGTTTA
TAATGAGGAAGCTGACACCCGTTTTTTTTTTTTTTTTCCCCTCCTGCCGA
CCCTGTTTTTATTACGCTGCTCCCCCCGCCCCTTTTTGGTCCCCCAATCT
TGTCTTACTCTCAATCCCTCGTCCTTCTCCCCCCACCCCTTTCTCCTTCC
CCCTCCCTCATTTATCTTTTTTTTTTTTACTATCACCCCTTCTTTCTTTT
TCCATCTTTTATCCATTTTCTCATCCCTCTTCTTCTCCTTCTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_i08.b1 MSMg01no348_i08.b1 CHROMAT_FILE:
MSMg01no348_i08.b1 PHD_FILE: MSMg01no348_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:50 2005
         (546 letters)



>mm_chr8_72521805_72522750
          Length = 946

 Score = 1044 bits (540), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactattccctgattaactcttggtttctccatctccataatttctctgctaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactattccctgattaactcttggtttctccatctccataatttctctgctaga 264

                                                                       
Query: 65  taggaactttccaaaaccctttctgcttcccaaccacttccagataaaatctaatctgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taggaactttccaaaaccctttctgcttcccaaccacttccagataaaatctaatctgtc 324

                                                                       
Query: 125 atcccaaatttaacacatcatttggcaaaagttaaagcaaaaagagcttcaactatcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcccaaatttaacacatcatttggcaaaagttaaagcaaaaagagcttcaactatcttc 384

                                                                       
Query: 185 ccccattttaaaagtatttatattatgtgacggttgctttgcttgtctgaaccaagtacg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccattttaaaagtatttatattatgtgacggttgctttgcttgtctgaaccaagtacg 444

                                                                       
Query: 245 gtgtccccactgtatgccagaagaaggcatcagattccctggaactggagtcacagacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtccccactgtatgccagaagaaggcatcagattccctggaactggagtcacagacaa 504

                                                                       
Query: 305 ttatgaactgctatgtagggtctaggaatcgaacctggactagaaaagcagccaagtgct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatgaactgctatgtagggtctaggaatcgaacctggactagaaaagcagccaagtgct 564

                                                                       
Query: 365 cttaacctctgagccatccttccagttctgtccctttttaagcaggatctcatgtagccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttaacctctgagccatccttccagttctgtccctttttaagcaggatctcatgtagccc 624

                                                                       
Query: 425 aggtggccttaaatgtcctccagttacaagtaaggccttgaactcctgatcctcaggcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggtggccttaaatgtcctccagttacaagtaaggccttgaactcctgatcctcaggcat 684

                                                                       
Query: 485 agacatcccaagtatgacaggtatgtgccatcacacccagtttctgcaatgcttgtgcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agacatcccaagtatgacaggtatgtgccatcacacccagtttctgcaatgcttgtgcta 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_i08.g1 MSMg01no348_i08.g1 CHROMAT_FILE:
MSMg01no348_i08.g1 PHD_FILE: MSMg01no348_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:50 2005
         (393 letters)



>mm_chr8_72683681_72684473
          Length = 793

 Score =  737 bits (381), Expect = 0.0
 Identities = 390/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagactggccagggctacatagtgagaccctatctaaagaattaaagtatgaagagtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tagactggccagggctacatagtgagaccctatctaaagaattaaagtatgaagagtggt 643

                                                                       
Query: 61  tgaggaagacccctgcccccacggtgacctctggcctccacacaacacaagagagaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgaggaagacccctgcccccacggtgacctctggcctccacacaacacaagagagaaagc 583

                                                                       
Query: 121 tgaggcagagacgaccccgttccccctccccccagctcatctacacacttcctcttagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgaggcagagacgaccccgttccccctccccccagctcatctacacacttcctcttagac 523

                                                                       
Query: 181 ttccccagcagacaccttgcccagaaatacatgaaagaatgcaaatcttcgatcactcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttccccagcagacaccttgcccagaaatacatgaaagaatgcaaatcttcgatcactcag 463

                                                                       
Query: 241 ctcgttctagagacgcttgtggcccaggtgtggcgtggagtgcggaggcggccgccaggg 300
           | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cacgggctagagacgcttgtggcccaggtgtggcgtggagtgcggaggcggccgccaggg 403

                                                                       
Query: 301 ctcagcagacctatttgtacttctatgcaaattacccagccacaaacggacccccctgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctcagcagacctatttgtacttctatgcaaattacccagccacaaacggacccccctgcc 343

                                            
Query: 361 tcagctccagatgttggggtgatcggaatgtgg 393
           |||||||||||||||||||||||||||||||||
Sbjct: 342 tcagctccagatgttggggtgatcggaatgtgg 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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