BAC Information

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BAC

Clone NameMSMg01-349A07
Chromosome8 (Build37)
Map Location 26,702,473 - 26,826,133
singlet/doubletdoublet
Overlap geneD030041N04Rik, LOC100042416, Whsc1l1
Upstream geneIndo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1
Downstream genePpapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349A07.T7 (MSMg01no349_a07.b1)MSMg01-349A07.TJ (MSMg01no349_a07.g1)
ACCAG460974AG460975
length715766
length of high quality
(start - end)		650 (45 - 694)542 (75 - 616)
definitionCHROMAT_FILE: MSMg01no349_a07.b1 PHD_FILE: MSMg01no349_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:31 2005CHROMAT_FILE: MSMg01no349_a07.g1 PHD_FILE: MSMg01no349_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,702,473 - 26,703,115)(26,825,592 - 26,826,133)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCTGAATTGCGTGATTCCAATTGCTTGGCATTCTGGGAAAGACA
AAACTACAGAGGGAAACATCTGTAGTCACCAGACTGAAAGAGAGACACAG
CAGATACAAACAGGCACAAGACAGGTGTTTTAGAACAGTGAGACTATTCC
ATGTGACCCTGTGATGGTGGACCGGGAGGTCCTCAGAGCTGACAGACCTG
GGAACCACAAAGTGTGAATCCCAGCGTCAGCCACGTGCTTTCGTTAATAA
CAGTGTATAATGTATTAACATTAGTCACATGTACCACACAGATACAAGTT
GTTATCAACAGCAAACCCACGGGCTGTGAGAGGTGAATATGTGGAATATG
GCAACTCTATTTTCTGCCTAGTTTTCCTGTAAACCTATGAAACGGCTTTA
AAAACTAAAGTCTATTAGTTCTTTAAGAAAGCTTTAAAATCCCGTGTACC
TTTTTGGATTCACTTTCAAAAGTTGACGGCAACATGTCTGGGAAGAGCTT
CAGAAACACTGGTATCAAGAACTCCATAAAAGGTACAATTATGAACACCA
TAAATGGAACCAAGCGGAAGACATCGGCACACGTTCTCAACAGCTGAAGA
GACAAACGCACAGCAACGTTATATATGCAGGATATGCCCCATCCTTACCA
TCCAAGACCCACCGT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCGGGCCGACGCCTTGGTATGCTTG
GGTCTGTACTATTCAAACCTCACAGCCATGTTTGCAAACACTGACTTTGT
GGGGGGCGGTTTCAAGTGCTTTCTACGTGGAGCATCTCTGTGGCTCCTAC
ATACCCTGTAAAAGAGCAAGTTCTTCCCCTTATGCAATGGGGACAGTCTT
AAGTATTGCATAATACTAAGTAGAAATGGTTCACATATAACTTAGGGATG
TTTCTGTCCACTTGCACCATCCCTAAGTTAGGAAATCAACTGAAAAAGTC
TATTTCATATAATTCAGATTCAGTTACATAGCTTTACCAGGAAACATGAC
TGAGTGACCCAGCTGGCAAAGGAAACATGATTGGCAGAGGGAAAGACAGA
AAATAAAATGCCCTTAAATTCCAGGTTAGACTGGAGTCTACATTAAATTG
GTCAGAAAATGGTGCATATATGATCCAATGTTTGGTCTGTGCCTTATCTT
TCTTTAGCCTCTTGCCAGTGGTCAGGACAGCAGGAATGAGCATTCCCCTA
TGTATTCACATCCCTCAAATGTTTCAGAAAATCACAATGAGTAGAATGCA
CTCACTCCTTGTCCCTCTAAATATTTCTACGTAAAGTTGGCGCACCATGA
AGCCCCCCCCGTTTTAGACCCCACAGTTAAATGCTGTCAAGGAGTTTGTT
TTCTCTAAGCCCGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_a07.b1 MSMg01no349_a07.b1 CHROMAT_FILE:
MSMg01no349_a07.b1 PHD_FILE: MSMg01no349_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:31 2005
         (650 letters)



>mm_chr8_26702269_26703318
          Length = 1050

 Score = 1135 bits (587), Expect = 0.0
 Identities = 629/643 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtctgaattgcgtgattccaattgcttggcattctgggaaagacaaaactaca 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtctgaagtgtgtgattccaattgcttggcattctgggaaagacaaaactaca 264

                                                                       
Query: 65  gagggaaacatctgtagtcaccagactgaaagagagacacagcagatacaaacaggcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagggaaacatctgtagtcaccagactgaaagagagacacagcagatacaaacaggcaca 324

                                                                       
Query: 125 agacaggtgttttagaacagtgagactattccatgtgaccctgtgatggtggaccgggag 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 agacaggtgttttagaacagtgagactattgcatgtgaccctgtgatggtggaccgggag 384

                                                                       
Query: 185 gtcctcagagctgacagacctgggaaccacaaagtgtgaatcccagcgtcagccacgtgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 gtcctcagagctgacagacctgggaaccacaaagtgtgaatcccagcgtcagccatgtgc 444

                                                                       
Query: 245 tttcgttaataacagtgtataatgtattaacattagtcacatgtaccacacagatacaag 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 445 tttcattaataacagtgtataatgtattaacattagtcacatgtaccacacggatgcaag 504

                                                                       
Query: 305 ttgttatcaacagcaaacccacgggctgtgagaggtgaatatgtggaatatggcaactct 364
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 505 ttgttatcaacagcaaacccacaggctgtgagagctgaatatgtggaatatggcaactct 564

                                                                       
Query: 365 attttctgcctagttttcctgtaaacctatgaaacggctttaaaaactaaagtctattag 424
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 attttctgtctagttttcctgtaaacctatgaaactgctttaaaaactaaagtctattag 624

                                                                       
Query: 425 ttctttaagaaagctttaaaatcccgtgtacctttttggattcactttcaaaagttgacg 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 625 ttctttaagaaagctttaaaatcccgtgtacctttttggattcactttcaaaagttgatg 684

                                                                       
Query: 485 gcaacatgtctgggaagagcttcagaaacactggtatcaagaactccataaaaggtacaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaacatgtctgggaagagcttcagaaacactggtatcaagaactccataaaaggtacaa 744

                                                                       
Query: 545 ttatgaacaccataaatggaaccaagcggaagacatcggcacacgttctcaacagctgaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttatgaacaccataaatggaaccaagcggaagacatcggcacacgttctcaacagctgaa 804

                                                      
Query: 605 gagacaaacgcacagcaacgttatatatgcaggatatgcccca 647
           |||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 805 gagacaaacgcacagcaatgttatatatgcaggttatgcccca 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_a07.g1 MSMg01no349_a07.g1 CHROMAT_FILE:
MSMg01no349_a07.g1 PHD_FILE: MSMg01no349_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:31 2005
         (542 letters)



>mm_chr8_26825392_26826333
          Length = 942

 Score = 1025 bits (530), Expect = 0.0
 Identities = 539/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcgggccgacgccttggtatgcttgggtctgtactattcaaacctcacagccatgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgcgggccgacgccttggtatgcttgggtctgtactattcaaacctcacagccatgtttg 683

                                                                       
Query: 61  caaacactgactttgtggggggcggtttcaagtgctttctacgtggagcatctctgtggc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 682 caaacactgactttgtggggggcggtttcaagtgctttctacatggagcatctctgtggc 623

                                                                       
Query: 121 tcctacataccctgtaaaagagcaagttcttccccttatgcaatggggacagtcttaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcctacataccctgtaaaagagcaagttcttccccttatgcaatggggacagtcttaagt 563

                                                                       
Query: 181 attgcataatactaagtagaaatggttcacatataacttagggatgtttctgtccacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attgcataatactaagtagaaatggttcacatataacttagggatgtttctgtccacttg 503

                                                                       
Query: 241 caccatccctaagttaggaaatcaactgaaaaagtctatttcatataattcagattcagt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 catcatccctaagttaggaaatcaactgaaaaagtctatttcatataattcagattcagt 443

                                                                       
Query: 301 tacatagctttaccaggaaacatgactgagtgacccagctggcaaaggaaacatgattgg 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatatagctttaccaggaaacatgactgagtgacccagctggcaaaggaaacatgattgg 383

                                                                       
Query: 361 cagagggaaagacagaaaataaaatgcccttaaattccaggttagactggagtctacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagagggaaagacagaaaataaaatgcccttaaattccaggttagactggagtctacatt 323

                                                                       
Query: 421 aaattggtcagaaaatggtgcatatatgatccaatgtttggtctgtgccttatctttctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaattggtcagaaaatggtgcatatatgatccaatgtttggtctgtgccttatctttctt 263

                                                                       
Query: 481 tagcctcttgccagtggtcaggacagcaggaatgagcattcccctatgtattcacatccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagcctcttgccagtggtcaggacagcaggaatgagcattcccctatgtattcacatccc 203

             
Query: 541 tc 542
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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