Query= MSMg01no349_d17.b1 MSMg01no349_d17.b1 CHROMAT_FILE:
MSMg01no349_d17.b1 PHD_FILE: MSMg01no349_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:47 2005
(527 letters)
>mm_chr8_23520018_23520943
Length = 926
Score = 897 bits (464), Expect = 0.0
Identities = 509/524 (97%), Gaps = 3/524 (0%)
Strand = Plus / Plus
Query: 5 gaattccacaccactaagccccttaccccataaaaacccctagcttcc-aagcctcgtgg 63
|||||||||||| |||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 205 gaattccacacccctaagccccttaccccataaaaacccctagcttctgaa-cctcatgg 263
Query: 64 ccgacatccgttatctcctgtgtaggatgcatgttggtctggagctccgtcattaaacta 123
||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 264 ccgacatccattatctcctgtgtaggctgcatgttggtccggagctccgtcattaaacta 323
Query: 124 cctcatgtaactacatcagggtggtctattcatgattctttgggtgcacgccgaatctgg 183
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 324 cctcatgtaactacatcagggtggtctattcatgattctttgggtgcccgctgaatctgg 383
Query: 184 aattgagtgggggtttccccactaggttctatcagtgtcaacactaagacatgtagaaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aattgagtgggggtttccccactaggttctatcagtgtcaacactaagacatgtagaaga 443
Query: 244 tagctttgatgcatctttatgttggaggaaaaatggcataaaataagttttaatttaatg 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 tagctttgatgcatctttatgttggaggaaaa-tggcataaaataagttttaatttaatg 502
Query: 304 tttctgatattggaggaatatacttggagttataaactactgtgtgttgttgttcctgtt 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 503 tttctgatattggaggaatatacttggagttataaactactgtgtgttgttgctcctgtt 562
Query: 364 cttacaaagatatatttggccagtacagagaaatgcaatatatttgattataaatgcctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttacaaagatatatttggccagtacagagaaatgcaatatatttgattataaatgcctt 622
Query: 424 ctgccttgtaattaatatagtatattatatattagatctaccctcagtgataaatgtatt 483
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 623 ctgccttgtaattaatatagtatattatatattagatctaacctcagtgataaatgcatt 682
Query: 484 ttgaagcttgaaaagagttgtaataaagttgtctgtaccgttgc 527
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 683 ttgaagcttgaaaagagttgtaataaaattgtctgtaccgttgc 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space: 473572
Effective search space used: 473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_d17.g1 MSMg01no349_d17.g1 CHROMAT_FILE:
MSMg01no349_d17.g1 PHD_FILE: MSMg01no349_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:47 2005
(483 letters)
>mm_chr8_23723474_23724356
Length = 883
Score = 820 bits (424), Expect = 0.0
Identities = 455/466 (97%), Gaps = 2/466 (0%)
Strand = Plus / Minus
Query: 20 ggcctgcaagctcacttggtggtctctcagttctggtaatgggacacacctgtatgctgg 79
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 883 ggcctgcaagctcacttggtggtctctctgttctggtaatgggacacacctgtatgctgg 824
Query: 80 acttccacagaataaa--actctttgtgtttacatactatttgagtcctgggtatcattc 137
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 823 acttccacagaataaaacactctttgtgtttacatactctttgagtcctgggtatcattc 764
Query: 138 ctcagcaagtcatggacccttacaacaggtatgcttgcctctgcctcttggaattcaagg 197
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 763 ctcagcaagtcatggacccttacaacaggtatgcttgcatctgcctcttggaatttaagg 704
Query: 198 tgtgctccaccacacccagcctgctccctagaacttgatggtgctcctgttaaggagaag 257
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 703 tgtgctccaccacacccagcctgctccctagaacttgatggtgctcctgttaagaagaag 644
Query: 258 gcagtagtttggggaaagagttaaggtgaaattaccggttctaagacaagctttgccaga 317
||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct: 643 gcagtagtttggggaaagagttaagatgaaattaccggttctaacacaagctttcccaga 584
Query: 318 agatgggttcacatgcatgagagctgtgattggcgtaaccatcaggctgttacccatact 377
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agatggattcacatgcatgagagctgtgattggcgtaaccatcaggctgttacccatact 524
Query: 378 gtatcagataatagttttttcaaactgagcctgaccctaggctactttgttttacaagca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gtatcagataatagttttttcaaactgagcctgaccctaggctactttgttttacaagca 464
Query: 438 gcttctgactctgttttgaaggaacaggatgacgacagctcttgag 483
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcttctgactctgttttgaaggaacaggatgacgacagctcttgag 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
