BAC Information

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BAC

Clone NameMSMg01-349F19
Chromosome8 (Build37)
Map Location 46,098,800 - 46,098,981
singlet/doubletsinglet
Overlap geneFat1
Upstream geneLOC100039508
Downstream geneLOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349F19.T7 (MSMg01no349_f19.b1)MSMg01-349F19.TJ (MSMg01no349_f19.g1)
ACCAG461237AG461238
length764804
length of high quality
(start - end)		580 (36 - 615)184 (71 - 254)
definitionCHROMAT_FILE: MSMg01no349_f19.b1 PHD_FILE: MSMg01no349_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:57 2005CHROMAT_FILE: MSMg01no349_f19.g1 PHD_FILE: MSMg01no349_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGC
TTCTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTAATACCAGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACAC
AATATATACTCACTGATAAGAGGATATTAGNCCAGAAACTTANGATACCC
AAGATATAAGATAAAATTTGCTAAACGCTTGAAACTCACGAAGAAAGAGA
ACCAAGTGGGACACTTTGCCCCTTCTANAATTGGGAACAAAAACCCTTGG
AAGAGTTCTGAGAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTGAAACAGAGAAGGCCATTAACTTACA
AGGTTTTAACACTGAAGCTTGAAAACCAGAAACCTAGCCAGCTATTGATT
CTCAGATAGCAACAAATAAACACGGATGGGGATTGTTGCTGCAGCTTCCA
CGAGCTTGAGTTTATATGATAAAGTAGGAGGGAGAAGGGGGGGGTGTGAT
GNNNNNNNCTTGNNATGNNNNAGNTTCNNNANANNCNTCTNNTCNNNGTA
TNTCGTGGTNTNNNTCTGTGTTTTTTTTTTNGNTGTGNNTGTCCNGCTCG
CACGACTTCGTACGGCAAACGCTAAGGGCGTAGTCTGGCTTTAAGTTTCC
TATCGACAGCCCCACCAGATTGCCTTAGTTGTTGGCCATACTCTATTTTC
GCCTGCCCTAATAACCTTCCTGCTCCTCACAATGACTCTTGTTGTTGCAC
CTCTCGCCTCGATTTCTCTCCCTGTGTCTCTTATCCCGCTTGTCCCCTAT
TTTTTTCTCTTCCCCCTTACCCCCCCTCCCCCCTTCCTTTCTCTCTTCTC
TCCCGATACCCTTTTCTCCCTTTTCTTTCAGTTTTTTCTTCCCTCTCGTC
TCCTCCTTCTTCACTCCCTCTCTCCCTGTTTTTCTCCCTTCTTCTCTTTC
CTCCCCCTCTCTTTTTTCTTTCTTTTTTCTCCCCCTTCCTTATCTCTTCT
CTTCCCGTCCTTTTATCGCGCCCTACCTCTCTACTTCTACCCTTACGCCT
TCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_f19.g1 MSMg01no349_f19.g1 CHROMAT_FILE:
MSMg01no349_f19.g1 PHD_FILE: MSMg01no349_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:57 2005
         (184 letters)



>mm_chr8_46098600_46099184
          Length = 585

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%), Gaps = 1/182 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgaaacagagaaggccattaacttacaaggttttaacactgaagcttgaaaaccaga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttgaaacagagaagtccattaacttacaaggttttaacactgaagcttgaaaaccaga 323

                                                                       
Query: 61  aacctagccagctattgattctcagatagcaacaaataaacacggatggggattgttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aacctagccagctattgattctcagatagcaacaaataaacacggatggggattgttgct 263

                                                                       
Query: 121 gcagcttccacgagcttgagtttatatgataaagtaggagggagaa-ggggggggtgtga 179
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 gcagcttccacgagcttgagtttatatgataaagtaggagggagaagggggggggtgtga 203

             
Query: 180 tg 181
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 585
Length adjustment: 8
Effective length of query: 176
Effective length of database: 577
Effective search space:   101552
Effective search space used:   101552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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