BAC Information

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BAC

Clone NameMSMg01-350A21
Chromosome8 (Build37)
Map Location 35,340,418 - 35,526,667
singlet/doubletdoublet
Overlap geneLOC619780, LOC666718, EG234159
Upstream geneWrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66
Downstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350A21.T7 (MSMg01no350_a21.b1)MSMg01-350A21.TJ (MSMg01no350_a21.g1)
ACCAG461761AG461762
length755772
length of high quality
(start - end)		509 (76 - 584)463 (80 - 542)
definitionCHROMAT_FILE: MSMg01no350_a21.b1 PHD_FILE: MSMg01no350_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:51 2005CHROMAT_FILE: MSMg01no350_a21.g1 PHD_FILE: MSMg01no350_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,526,159 - 35,526,667)(35,340,418 - 35,340,880)
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGGACCG
CGGAATTCGCTTTCCTCCCCGGAGAACTACACACAACTATACAATTCCAA
CTCTAGGAGAACTGATATTCATCTTCTATCACCTGTACCCAGGTACAAAC
ACACACATGCATGTGCACACTGCACACACATGCACACATATGCCCATATA
CACATGTGTGTATGCATATATGCATATGCATGAATACATATACATACACC
AGAAACTAATAGACCTTTTTTTAAAAAAACCCTCACCACATAGTTCCTAG
TATGAGTAGTACCGGTGAATGTTAATGTAAATGGTGGTAATTAGTTCGAG
AAGTAAAGATTTACAATGAACAAATCTCATTAAGATGTCACCTGTGTGTC
AAATTTAAGCCGAATAGACACAATCCCAGTGCCCTTATCCTACAAATCCA
TGTCTTTGTGGACAGAAATGTACTTCAGCAGATACTAAGGGAGAAAGAGA
GCCGAGTAGGATCTGCCAAGAAGCATATAAGCACCATCTTTAAGTGCCCG
TCACTGCCCACTCACCGAATGGATTGGATAATAGCAAGGAGAGCTGGTTC
GATTCTAAGGAAGAAAACCACACTGTAGAGACAGGAAGCAAGGTGAGTAC
TTACTTTTTACGAGCCTGCTATCCAGGGCTCAATATTCATATTTCATATT
ATCAGNCTTGTCCTCTCCTTTTAAACTCAAAACAAAGCTTCCCACCTACC
CCTTA

NNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGAGAGAGAACATACTG
TGTTCTGTGGATGAGTCACGTGATAAGATAGAACCGAGCTAGACACAGGG
ATCTACACTGTATGATTTCATCCTGGTCATATAAGAATATGGCCCAAGTG
AATCATTGCTATGGTTACCCTCAGGGGCATGGCTGCTTGTCGTCTTCTAA
GGAAGAGTGTAAGAGGTCTGTGGCCAGAGCCACGGTGACGGCTCCACCAG
CATGGCTGCTCTGTTGGTGGGAAACCCGATTTTAAAGGGCGATCTTCCAA
GGAAGGAAGCTTGGGTGAGAAAGGGCAAAATGGGAGAGGGAATTACATTA
TAGACAGTGGGTGAAAAGGGAAACTATGAACGAGATAAAATAACAAAAAG
TAAGGCACGGCCAAAACAAAACAAACAGGAACCCTGTTAGTCTCACATTT
TTACCATCTGTCAAGCAACTGAAATTAACCAGTCATCAAAATACTGCACC
ATTACACCAATGAACAAAAGGAACTTTTTACAGTTCTCAAAAACCGGACA
TGAGTTTATGCGCACAATCACTGAAGAAAAACTCCCTTCTTGAAAAACAA
CCTTGAAGCAAAAATAAATTTAGGGTTAATTGGTCCCCCCCCTGGAGGCA
AAAGGGGAAAAACTCCCTTTATTGTCCAAAAGGGTTTGTGGAATTATCCC
ATAGGCCCCCACTATTTTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_a21.b1 MSMg01no350_a21.b1 CHROMAT_FILE:
MSMg01no350_a21.b1 PHD_FILE: MSMg01no350_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:51 2005
         (509 letters)



>mm_chr8_35525789_35526697
          Length = 909

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacacacaactatacaattccaactctaggagaactgatattcatcttctatcacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 actacacacaactatacaattccaactctaggagaactgatattcatcttctatcacctg 820

                                                                       
Query: 61  tacccaggtacaaacacacacatgcatgtgcacactgcacacacatgcacacatatgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tacccaggtacaaacacacacatgcatgtgcacactgcacacacatgcacacatatgccc 760

                                                                       
Query: 121 atatacacatgtgtgtatgcatatatgcatatgcatgaatacatatacatacaccagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atatacacatgtgtgtatgcatatatgcatatgcatgaatacatatacatacaccagaaa 700

                                                                       
Query: 181 ctaatagacctttttttaaaaaaaccctcaccacatagttcctagtatgagtagtaccgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctaatagacctttttttaaaaaaaccctcaccacatagttcctagtatgagtagtaccgg 640

                                                                       
Query: 241 tgaatgttaatgtaaatggtggtaattagttcgagaagtaaagatttacaatgaacaaat 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgaatgttaatggaaatggtggtaattagttcgagaagtaaagatttacaatgaacaaat 580

                                                                       
Query: 301 ctcattaagatgtcacctgtgtgtcaaatttaagccgaatagacacaatcccagtgccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctcattaagatgtcacctgtgtgtcaaatttaagccgaatagacacaatcccagtgccct 520

                                                                       
Query: 361 tatcctacaaatccatgtctttgtggacagaaatgtacttcagcagatactaagggagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tatcctacaaatccatgtctttgtggacagaaatgtacttcagcagatactaagggagaa 460

                                                                       
Query: 421 agagagccgagtaggatctgccaagaagcatataagcaccatctttaagtgcccgtcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agagagccgagtaggatctgccaagaagcatataagcaccatctttaagtgcccgtcact 400

                                        
Query: 481 gcccactcaccgaatggattggataatag 509
           |||||||||||||||||||||||||||||
Sbjct: 399 gcccactcaccgaatggattggataatag 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_a21.g1 MSMg01no350_a21.g1 CHROMAT_FILE:
MSMg01no350_a21.g1 PHD_FILE: MSMg01no350_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:52 2005
         (463 letters)



>mm_chr8_35340218_35341080
          Length = 863

 Score =  895 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaggagagagaacatactgtgttctgtggatgagtcacgtgataagatagaaccgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaggagagagaacatactgtgttctgtggatgagtcacgtgataagatagaaccgagc 260

                                                                       
Query: 61  tagacacagggatctacactgtatgatttcatcctggtcatataagaatatggcccaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagacacagggatctacactgtatgatttcatcctggtcatataagaatatggcccaagt 320

                                                                       
Query: 121 gaatcattgctatggttaccctcaggggcatggctgcttgtcgtcttctaaggaagagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcattgctatggttaccctcaggggcatggctgcttgtcgtcttctaaggaagagtg 380

                                                                       
Query: 181 taagaggtctgtggccagagccacggtgacggctccaccagcatggctgctctgttggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaggtctgtggccagagccacggtgacggctccaccagcatggctgctctgttggtg 440

                                                                       
Query: 241 ggaaacccgattttaaagggcgatcttccaaggaaggaagcttgggtgagaaagggcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaacccgattttaaagggcgatcttccaaggaaggaagcttgggtgagaaagggcaaa 500

                                                                       
Query: 301 atgggagagggaattacattatagacagtgggtgaaaagggaaactatgaacgagataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgggagagggaattacattatagacagtgggtgaaaagggaaactatgaacgagataaa 560

                                                                       
Query: 361 ataacaaaaagtaaggcacggccaaaacaaaacaaacaggaaccctgttagtctcacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataacaaaaagtaaggcacggccaaaacaaaacaaacaggaaccctgttagtctcacatt 620

                                                      
Query: 421 tttaccatctgtcaagcaactgaaattaaccagtcatcaaaat 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaccatctgtcaagcaactgaaattaaccagtcatcaaaat 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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