BAC Information

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BAC

Clone NameMSMg01-350D18
Chromosome8 (Build37)
Map Location 75,740,900 - 75,741,317
singlet/doubletsinglet
Overlap geneLarge
Upstream gene2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350D18.T7 (MSMg01no350_d18.b1)MSMg01-350D18.TJ (MSMg01no350_d18.g1)
ACCAG461895AG461896
length777775
length of high quality
(start - end)
418 (49 - 466)418 (80 - 497)
definitionCHROMAT_FILE: MSMg01no350_d18.b1 PHD_FILE: MSMg01no350_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:06 2005CHROMAT_FILE: MSMg01no350_d18.g1 PHD_FILE: MSMg01no350_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATATGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAATCTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTAGATCTTACAGTACAAGCCATTGTTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATTGATTC
GCATTCTTCTACACGATAACAACCAGTTGTGCCAGGACCAATTGTTGAAA
ATGCTGTCTTTTCTTCCCTGGATGGGTTTAGCTCCCTTGTCGAAGAATCA
GTAACCTAAGTTGGCCGGGTTCTTTTTTGGGCCTTCAATTTCTATTCCCT
TGATCTACTTGTCGGCTCTATAACAAAACCATGCTCTTTTTTTATAATGG
TCTGTCTCAAATTTTTTTTCACCAATCGGTTTCTTTCTAAGCCTTCTTAC
CTTTATTTAACTATACTATACTTCGATTACCTCTTTTCCCATTATTTTCC
ATTTCTCTTCTTTTCCTCCTTCATTTG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCATCTTGTCTCTGCCAT
ACAAAAAGCAAAGCATAAGACTGATCTGCATTTAGCAAAAGCTTTCACAA
GGCACAGGAGTCTAGAGGTGTGGTTCAAGTGCTAGCTTGCACCTGATAGC
TACCCTGGCAAAGCCATTAAGATATCCTGTGCCCTCAGCAGTTTGATGTG
AGAGTCCATGGCAATTCAAGTGCAGCTAAAATGATCCAGGGGGAGAACCA
ATGAACTAAAAAATACACTGAAGGGGAAATAATGTGAGACACTGAGGGAT
TAAGATTAAAATTGATTGGTTGTATTTTAACCACTTACACAAACAAATTC
TAGAGCTAGAAAGAAATGAATGACTTCTTGCTCTGATAGCTGTGAATCAG
GAGGGAATAAACAACATGAGTTGTGGGCTGTACAGCTGCCTCCTGGCAAC
TTCTTAGTAGAGGGAAAATTACTAAAGTGGATAAAATGTTATTTCACCTG
GAGAAGAGAAATAGAAACCCCCCCTGAATCATCATTTGTATGGTACCACC
CTCTATAAACCCCTATACCCTTTGTTTAAAAGAAACTGCCCTGTGAAAAA
ACCCTGTTTTAAATTTTTCCCCCTCCTTGCGCAAAGGAATTAAAAGCGGG
TTTATAAATTCCTCGGTGTTATTCCTCTCCTTGTTTTGATGGTTTTTTTT
TCTTTTTTCACCTCTCACCCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_d18.g1 MSMg01no350_d18.g1 CHROMAT_FILE:
MSMg01no350_d18.g1 PHD_FILE: MSMg01no350_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:06 2005
         (418 letters)



>mm_chr8_75740700_75741517
          Length = 818

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccatcttgtctctgccatacaaaaagcaaagcataagactgatctgcatttagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccatcttgtctctgccatacaaaaagcaaagcataagactgatctgcatttagcaaa 260

                                                                       
Query: 61  agctttcacaaggcacaggagtctagaggtgtggttcaagtgctagcttgcacctgatag 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 agctttcacaaggcacaggagtctagaggtgtggttcaagtgctggcttgcacctgatag 320

                                                                       
Query: 121 ctaccctggcaaagccattaagatatcctgtgccctcagcagtttgatgtgagagtccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaccctggcaaagccattaagatatcctgtgccctcagcagtttgatgtgagagtccat 380

                                                                       
Query: 181 ggcaattcaagtgcagctaaaatgatccagggggagaaccaatgaactaaaaaatacact 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaattcaagtgcagctaaaaggatccagggggagaaccaatgaactaaaaaatacact 440

                                                                       
Query: 241 gaaggggaaataatgtgagacactgagggattaagattaaaattgattggttgtatttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggggaaataatgtgagacactgagggattaagattaaaattgattggttgtatttta 500

                                                                       
Query: 301 accacttacacaaacaaattctagagctagaaagaaatgaatgacttcttgctctgatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accacttacacaaacaaattctagagctagaaagaaatgaatgacttcttgctctgatag 560

                                                                     
Query: 361 ctgtgaatcaggagggaataaacaacatgagttgtgggctgtacagctgcctcctggc 418
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtgaatcaggagggaataaacaatatgagttgtgggctgtacagctgcctcctggc 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)