BAC Information

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BAC

Clone NameMSMg01-350F13
Chromosome8 (Build37)
Map Location 12,311,091 - 12,311,619
singlet/doubletsinglet
Overlap genenone
Upstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
Downstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350F13.T7 (MSMg01no350_f13.b1)MSMg01-350F13.TJ (MSMg01no350_f13.g1)
ACCAG461981AG461982
length7751,205
length of high quality
(start - end)
533 (52 - 584)---
definitionCHROMAT_FILE: MSMg01no350_f13.b1 PHD_FILE: MSMg01no350_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:14 2005CHROMAT_FILE: MSMg01no350_f13.g1 PHD_FILE: MSMg01no350_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTAGTCTACTTCCTGCGTTCAGGGACTCCATTCCCATT
CCCACAGGAAAGCAGGGCAGATGAAGAACCTGCACACTGGTGGGGGACAC
TCTTAGGATATCCCAGTTTGTCCCTTGATGTCTTCATGGTTGGCCATCTG
CTCTTGACTCAACTGGTGACAGACATAGTGATTGACTGTGTAGGAAATGG
TGGTCACACACGGAGACATATTGTCTTACACTGAGGAAGCCAGCAGGATT
CACATGCATGTGTTAAGCTCCCAAACACGCCACAGAACGTTAGCACCCGG
ACCTCATCTCACGGTAACAAAACATGTCTGACAGAACCCTGAACACAATT
CTTATTCTCCCTAGTGAAGCTGTCAAAGGTTAGAACCTACTGGGTGGCCA
GGAGCTGCCTCTCTCATTAGGTCATCAGGTGCCCTGACAGTGGACAGTCC
ACAGGCTTCCCATGTAGGACAGAAAATCCCCAAAATACAAACACTTTCAA
CCAGACCATTTCAAGCAGCCTGCTTGTGGACAGCCATGAAGGTCAAGGTC
ATGGCATTCATGACTTTCACTGGTAAAGGGGATAAAGAATTCCCTTTATT
CGGCCCAAATCTGTTCCCCATAGGGACCAAAACCTCCGCCCTCTCTTCAC
CCCTGAAACTACCTTTATACCCTGTCCCCCGGGTTTAAAACAACCTTTAA
AGAACCCTGGTAGGTAAAAAACCCC
CCAGTGCAGCGAGCAAGCCCGGCCCCCGCCCTGCGACGCGTCGTCCAAGT
GTTTCCATAACAACGACGAAGGACGCCGACTTACCATNAGCTGTTTCCCC
CCGCGCAACGCGCTCGCAGCGCGACGCCTGCTCTCTACTCCCCCTCACTC
TCCTCTTCCGTCTGCGCCGTGATTTGTGCGCGCGTTGTNGTGTGTCGTCT
GAGAGCGCCCTCCTGTCCCGTCGTGCGTCGCGTGCCTCCTCGGTCGCGTC
CGGGGCGCGGTGCCGCGCACTATATCATATCATCCCTTTGAGCATCAATA
AATTATGAGAACTTATAGTGACATGTGTAGAGGTATATTTTAATAACTCC
TCCTGACTGTTCACCTATTCAGCTTTATTATATATCACAATATAACCGCT
CATCAACTATTGCTATATGACCCTATGTGCACGGACTGTTACCTGTATTA
GATAATGAATTTGTCCCGTAACGACTCTATTTCTTTTGTGGTTACCTTGT
TGCAGACGGGGAAGTGGTGTGTTGTTGGTGTGGTCCGGTGCCTTGTTGCT
TATACCTCCGTGATATGCGAGCAAGCGATGCGAGTAACGGAGAGAGACGA
CAGCCAGTCGCGTGAATGTTTCTTCGATAGATACCATCAAGCAGACGTGG
GATGCGTGAGTAATTCCGTCCGCCCTAGTATATATAAATCCTCCTACCCA
ATCATCAACACGTCTCCACGACGCCGTGAGCTAATATGTCTCTATATTCT
TGATNTCCGCAGATACACGCACACGTATTCGCACTACCATGACTACCGCT
ACGGCGGCCCGACAGTGACGCCATCGACAGAGCGAATATCACAGTACTAT
TCGTTGCCTCGAACACGTATTTCGCCGATTGCGCGTCTATATCGTCGCAG
CACTCCGCTTGGATTACACCTTGGTGACTGTCCGCTCGAGTTACCACGTC
TATATAACAGATTGTATCTCCTCATAGTTATATCTTCTCGTCCGCCTGTC
GCGTCTCTCCTTCTTCATCTCACTTCTCGACCCCTGTGCGCCGACGCGTT
GCCACTGATAACACATTCCGCCGCTATAAAGAGTCTGATAGATACGAAAC
TCCTCATCGCACTCGACCTTGTCGTGTACGATGCCGGACGGTGCGACGCT
GACGTGCGTGTGACCGTCGAGCGCCGGACACGCTAGAGAGCCGTACGTAC
GCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_f13.b1 MSMg01no350_f13.b1 CHROMAT_FILE:
MSMg01no350_f13.b1 PHD_FILE: MSMg01no350_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:14 2005
         (533 letters)



>mm_chr8_12310887_12311819
          Length = 933

 Score = 1015 bits (525), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtagtctacttcctgcgttcagggactccattcccattcccacaggaaagcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtagtctacttcctgcgttcagggactccattcccattcccacaggaaagcag 264

                                                                       
Query: 65  ggcagatgaagaacctgcacactggtgggggacactcttaggatatcccagtttgtccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcagatgaagaacctgcacactggtgggggacactcttaggatatcccagtttgtccct 324

                                                                       
Query: 125 tgatgtcttcatggttggccatctgctcttgactcaactggtgacagacatagtgattga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatgtcttcatggttggccatctgctcttgactcaactggtgacagacatagtgattga 384

                                                                       
Query: 185 ctgtgtaggaaatggtggtcacacacggagacatattgtcttacactgaggaagccagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtgtaggaaatggtggtcacacacggagacatattgtcttacactgaggaagccagca 444

                                                                       
Query: 245 ggattcacatgcatgtgttaagctcccaaacacgccacagaacgttagcacccggacctc 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 ggattcacatgcatgtgttaagctcccaaacacaccacagaacgttagcacccggacctc 504

                                                                       
Query: 305 atctcacggtaacaaaacatgtctgacagaaccctgaacacaattcttattctccctagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctcacggtaacaaaacatgtctgacagaaccctgaacacaattcttattctccctagt 564

                                                                       
Query: 365 gaagctgtcaaaggttagaacctactgggtggccaggagctgcctctctcattaggtcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagctgtcaaaggttagaacctactgggtggccaggagctgcctctctcattaggtcat 624

                                                                       
Query: 425 caggtgccctgacagtggacagtccacaggcttcccatgtaggacagaaaatccccaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caggtgccctgacagtggacagtccacaggcttcccatgtaggacagaaaatccccaaaa 684

                                                            
Query: 485 tacaaacactttcaaccagaccatttcaagcagcctgcttgtggacagc 533
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacaaacactttcaaccagaccatttcaagcagcctgcttgtggacagc 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)