BAC Information

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BAC

Clone NameMSMg01-350J23
Chromosome8 (Build37)
Map Location 104,543,949 - 104,544,337
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350J23.T7 (MSMg01no350_j23.b1)MSMg01-350J23.TJ (MSMg01no350_j23.g1)
ACCAG462190AG462191
length793788
length of high quality
(start - end)
409 (58 - 466)389 (80 - 468)
definitionCHROMAT_FILE: MSMg01no350_j23.b1 PHD_FILE: MSMg01no350_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:36 2005CHROMAT_FILE: MSMg01no350_j23.g1 PHD_FILE: MSMg01no350_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAAT
CCGCGGAATTCTCTATCTCTTTCTTTTTTAAACTGGGTTATTTGGGTCAT
TGGTGTCTAGCATCATTATTTTTTCATAAATTTTGGATATTAGCCTTCTG
CCAAATGGTTGGTCAAGATCCTTTCCCAGTCAGTAGGGTGATGTTTTGTC
CCATTTATACTGTTCTTTGCCATACAGAAGCCTCTTCATGCTAAGGGTCT
TAGAAAGAACAGGGATACAAAACACATATCTAAACATAATAAAAACAATA
AACAGCAAGCCAATAGCTAATATAGCATTAAATGTTTATAAACTAAATGC
AGTTCCACAAAATTTAGGACAAGACAAGGTGACCTACTCTCTCCCTGTCT
ATTCAGTATAGTACTTGTAGTTATAGCCAGAGCAATAAGACAACTAAAGA
ATATCAAGAGGATACNAACTGGGAAGGATTTAGTCAAAGTATCATATTGC
CATTTATGGATGATATGATAGCATATTCCCAAAATTCTACCAAAGAACTC
CTCAGCTGAAATACAACTTCCGCAAAGGGACTGGGTTTTAAATTAATTTA
AACTAAATCCGGAGCTTCCTTTTTTTTCCCTGGGTAAAGAAATTTAAGGA
ACCCCCCCCCTTTTAAAAACCAAAGTGTAAAAAAATTACCCTGGCGGATC
CCCCCACAAAAAAAAAACATTTGTTCGAAAATTCTCTTTTTTCTGCTAAA
AAATTGGGTAAACAATACAAATAGGTGAATCCCCCTCTTTCTT
NTTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACATCCTCAAGGATGGCAG
GTATTGACTGTATAGTGCGATCAAGTGGATGGAGTAGTGCTCTGAGATGG
GATGGGTAATATTAGAAGTTGCGATCTCTAGTAGCTCTTTGTTTCTACCA
CATGCACTGCTGGTGACAAATTAACATTCAACTTCAGTGCAACATCCCCA
CACAGCTCATAGCCTATCAGTGAAGACCTCCGGATTCTGACTGTGTGGGA
ATCCAAATACGTATAGCAAATAAACTGACAGCAAAAACAGGATCTTCTCC
AAACACGGGGTTAAAGCAAGTACGAAGATTACTTGTGAAGAAATAAGTCT
CCATTTATGCTGATTTGGCAGTGATTACAAAGAGGTTTATTTTAATTATT
ATTTTGAGTGGCAGAACTGGTGAAATGCTAACAACTTCAATGCACCATGC
CGCACATTGAGCGCAAAGAGTATTTCTAGAAAATGATGATGGGTTTCTTA
ACTAATCCAAAAGGGGAGGGTTTTTTTAGCCCTATTGGACTCCCTTATTT
CCAGGTGTTCCCTTGGATATTTTTAATGTCTTTGGGCATTTTTTACCCTG
GGAGCCGGAAAACACTTTTCCCCTTGCGCAAATTAACGCTTTCTTTGCTT
TTTTCTCGGCTTTTTTATATTTTGTTTCACCCCCCCACTTTTGNATTTTT
TTCCCTTCTCTTCCTCTATTTTCCCGGTATCTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_j23.g1 MSMg01no350_j23.g1 CHROMAT_FILE:
MSMg01no350_j23.g1 PHD_FILE: MSMg01no350_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:36 2005
         (389 letters)



>mm_chr8_104543749_104544537
          Length = 789

 Score =  729 bits (377), Expect = 0.0
 Identities = 386/389 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacatcctcaaggatggcaggtattgactgtatagtgcgatcaagtggatggagtagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacatcctcaaggatggcaggtattgactgtatagtgcgatcaagtggatggagtagtg 260

                                                                       
Query: 61  ctctgagatgggatgggtaatattagaagttgcgatctctagtagctctttgtttctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgagatgggatgggtaatattagaagttgcgatctctagtagctctttgtttctacc 320

                                                                       
Query: 121 acatgcactgctggtgacaaattaacattcaacttcagtgcaacatccccacacagctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgcactgctggtgacaaattaacattcaacttcagtgcaacatccccacacagctca 380

                                                                       
Query: 181 tagcctatcagtgaagacctccggattctgactgtgtgggaatccaaatacgtatagcaa 240
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcctatcaatgaagacctctggattctgactgtgtgggaatccaaatacgtatagcaa 440

                                                                       
Query: 241 ataaactgacagcaaaaacaggatcttctccaaacacggggttaaagcaagtacgaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaactgacagcaaaaacaggatcttctccaaacacggggttaaagcaagtacgaagat 500

                                                                       
Query: 301 tacttgtgaagaaataagtctccatttatgctgatttggcagtgattacaaagaggttta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tacttgtgaagaaataagtctccatttatgctgatttggcagtgattacaaaaaggttta 560

                                        
Query: 361 ttttaattattattttgagtggcagaact 389
           |||||||||||||||||||||||||||||
Sbjct: 561 ttttaattattattttgagtggcagaact 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)