Query= MSMg01no350_l17.b1 MSMg01no350_l17.b1 CHROMAT_FILE:
MSMg01no350_l17.b1 PHD_FILE: MSMg01no350_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:45 2005
(506 letters)
>mm_chr8_103984227_103985132
Length = 906
Score = 882 bits (456), Expect = 0.0
Identities = 498/524 (95%), Gaps = 22/524 (4%)
Strand = Plus / Minus
Query: 5 gaattctgaaat-ataacttgaattaatcatgtagaagtcatgggctttttctttctttc 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattctgaaataaaaacttgaattaatcatgtagaagtcatgggctttttctttctttc 844
Query: 64 tttatttccttcttcttc---ttcttcttcttcttcttcttcttcttcttcttcttcttc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tttatttccttcttcttctttttcttcttcttcttcttcttcttcttcttcttcttcttc 784
Query: 121 ttcttcttc-g-----------------tcttcgtcttcgtcttcgtcttcgtcttcgtc 162
||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 783 ttcttcttctgcttcttcttcttcttcttcttcttcttcgtcttcgtcttcgtcttcgtc 724
Query: 163 ttcgtcttcgtcttcttttcccattttctacaagcagaaatgttttacaagatggttggg 222
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttcgtcttcttcttcttttcccattttctacaagcagaaatgttttacaagatggttggg 664
Query: 223 aagatgaaatgggataatgaaacattatttatgattaaaataattctattagttttgtgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aagatgaaatgggataatgaaacattatttatgattaaaataattctattagttttgtgt 604
Query: 283 aactagactgtggtgtgattaacttgcaatgagacaggctttttgtgttcagagaatcaa 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 603 aactagactgtggtgtgattaacttgcaatgagacaggctttttgtgttcagaggatcaa 544
Query: 343 ggatgctgtctacagtggatcagttctaatgagtgcagagataaaaaagggaaagatttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggatgctgtctacagtggatcagttctaatgagtgcagagataaaaaagggaaagatttg 484
Query: 403 tgtcatagccaaattccatacctccagccagaacaaaggaaaagaatgatgtctcagaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtcatagccaaattccatacctccagccagaacaaaggaaaagaatgatgtctcagaaa 424
Query: 463 cctttagcatcatgagctcaatgatccaggtcctatatctagaa 506
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctttagcatcatgagctcaatgatccaggtcctatatctagaa 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_l17.g1 MSMg01no350_l17.g1 CHROMAT_FILE:
MSMg01no350_l17.g1 PHD_FILE: MSMg01no350_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:45 2005
(445 letters)
>mm_chr8_103856201_103857045
Length = 845
Score = 837 bits (433), Expect = 0.0
Identities = 442/445 (99%)
Strand = Plus / Plus
Query: 1 actcagaaacaacttgagctgtgcttaatcctaggagtatggaggaaaagagttaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcagaaacaacttgagctgtgcttaatcctaggagtatggaggaaaagagttaaataa 260
Query: 61 cacttctcttgctgctgctgtgcccactgatacttttccaaaaggccagtaccatatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttctcttgctgctgctgtgcccactgatacttttccaaaaggccagtaccatatgca 320
Query: 121 gataaagaaagaagaagggacattgagtggtattagactatcacacgtaattatatagaa 180
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gataaggaaagaagaagggacattgagtggtattagacaatcacacgtaattatatagaa 380
Query: 181 tccaggtaaggctttatagaaaagccaggaaagacattccttttgctcaggagtttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaggtaaggctttatagaaaagccaggaaagacattccttttgctcaggagtttgctt 440
Query: 241 tcagagggaggagaaatggtgtgggttatgaagctcactctcattcaaattaatggcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagagggaggagaaatggtgtgggttatgaagctcactctcattcaaattaatggcttc 500
Query: 301 tttcttattgttttcatgtccatatgtttatgagtatacatgtatatattcctaaataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcttattgttttcatgtccatatgtttatgagtatacatgtatatattcctaaataga 560
Query: 361 gcttgctcagggaatgtaatgttactcccatgcacactttcagtgctgatcctctggtgt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttgctcagggaatgtaatgttactcccatgcacactttcagtgctgatcctctggtgt 620
Query: 421 tggataaacaatgagtgagctcatc 445
|||||||||||||||||||||||||
Sbjct: 621 tggataaacaatgagtgagctcatc 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
