BAC Information

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BAC

Clone NameMSMg01-350P08
Chromosome8 (Build37)
Map Location 48,663,436 - 48,663,554
singlet/doubletsinglet
Overlap genenone
Upstream geneMlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a
Downstream geneLOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350P08.T7 (MSMg01no350_p08.b1)MSMg01-350P08.TJ (MSMg01no350_p08.g1)
ACCAG462445AG462446
length822802
length of high quality
(start - end)
143 (80 - 222)119 (85 - 203)
definitionCHROMAT_FILE: MSMg01no350_p08.b1 PHD_FILE: MSMg01no350_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:04 2005CHROMAT_FILE: MSMg01no350_p08.g1 PHD_FILE: MSMg01no350_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGAGATTCCCTTTGAATTCTACCCTCCCAAGCGCTG
GGATTAAAGGTCTGCGCAGCGCCCCGTTAGGCCACCTAGTTATAAACTTT
TTTTTAATTAATTAATTAATTAATTATTTTTTAATTAGGTATTTTCCTCG
TTTACATTTTCAATGCTATCCCAAAAGTCCCCGATACCCACCCCCCCAAT
CCCCTACCCATCCACTCCCCCCTTTTGGTCCGGGAGTTCCTCTGTAGCGG
GGTATATCAAGTCTGTCCGTCCAATTGTTTTTTTCTTCCCGGAAAGGGAT
GACTAGGCCACGCTTTTGTTATATACGCCACTTATAGTCCTGTAGTTCCA
TGGCCATTGTGTTATCCTCTTTTTGTTGTTTCCACCCCCCCAACTTTCAG
ATTATTTTAATCCTCCCCGTCTTACCTTTCTTTCGTTTTTACCTTTTAGT
TTCTTCGCTCCGTCTTCCGTACATATTTTTTCTATTGTCCCCTCTTCTTT
CTATTTGTTTCCTCTCCTTTCTTTCCCTCCTTCTTCTCTTTTCCTTCGCC
TCCTCTCCCTTAGTTCCTGCTCTTCCCTTTATTGCCTGTTCCACTCCCCC
TTCGTACTTCGTTTTTTTTTGCTGATCTCCTTATTTAATACTTCCTTTCA
TCTCTTATTCGTCTTCTCTCTCTCCTCTCCTCTTCCTATTTCCCCTGTCT
TTTTGTTTCCTTTTTCCTTCTCTTAGCTTTTTTAGTCCTGCGTTCGTCTC
CCTTTTCATCTTCTTTACTTTT
CCCCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATGCTGGAGAGGC
AGGGCAAGCTACAGCCTTCCATTTTCCAGATAATGGTGGTGGTGTTGCTG
TTCTCACTGAGGTTGGAGTTTTCCCTGAGACTGTGTTGGAGGAAAACGGC
TTCTCTCCAAGAACAAACATCTCTCCTTCCTGTGTCAAATGCTGTATCTC
ATCTTGGTTTCCAAATACAAAATTTGATGTGTACAGGATTCTAGAACCCA
CTCCTATAACACCCAGAATTCTCATTCACTTGATATAGCCTTCTTGTTGT
TGTTGTTGTTTTTGTTCTTCGTACTTTTCTCTTCCTCTTTACCATCTCAC
TTTTTTTTCCTTCCTCCTCTTCCTTTCCTTTTTCTTCTTTTTTTTTTTTT
CTTCTCCTCTTTTTCTCTCTTTTCTCTTCCTTCTTTTTCCTCTCTTTTCT
TTCCCCTTTTATTTCTCTTCTTTCTTTTTTTTTCCTTCTCCTTTTTTTCT
TCTTTTTCTCTTTTTTTCTTTTTCCCTTCTTTTTCCCTTTCTTTTCCTCT
TTCTCTCTTCTTCTTCTCTTCTTTCTTCTCCTCCTTTTCTTCTTTTTTTT
CTTTTTCATCTCTCTTATTTTTCTTTTCTCCACTTTCACTTCCTACCTTC
CTCCATCCTTCTCTTCCTCCTCTCTTTTTCCTTCCTCCTCTCCCCTTCCT
TCCCCCTCCTCTTCTTTTTATTTCTTTTTTATACTCCTCTCTCTCTACTT
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_p08.g1 MSMg01no350_p08.g1 CHROMAT_FILE:
MSMg01no350_p08.g1 PHD_FILE: MSMg01no350_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:05 2005
         (119 letters)



>mm_chr8_48663236_48663754
          Length = 519

 Score =  207 bits (107), Expect = 2e-58
 Identities = 116/119 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatgctggagaggcagggcaagctacagccttccattttccagataatggtggtggtg 60
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatgctggagaggcggggcaagctgcagccttccattttccagataatggtggtggtg 260

                                                                      
Query: 61  ttgctgttctcactgaggttggagttttccctgagactgtgttggaggaaaacggcttc 119
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttgctgttctcactgaggttggagttttccctgagactgggttggaggaaaacggcttc 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)