NNNNNNNNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACCTGAGGAATACCAAATGGCTGAGAAACACC
TGAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCTAAAA
AAAAACCCGATTTTCTACCTCACACCATTCAGAATGGCTAAGATAAAAAA
TTAGGTGACAGTAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAAGCTTGTACAACAACTCTGGAAATCTGTCT
GGCGGTTCTTCAGAAAATTGGACATAGTACTACCGGAGGATCTCCCAATA
CCTCTCCTGAGCATATATCCAGAAGATGTTCCAAGTGGTAAGAAGGACAC
ATGCTCCACTATGTTCGTAGCTTCCTTATTTATAATAGCCAAAAGCTGGA
AAGAGCCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATCTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGGGCTTCATTCTGAATGAGGTAA
CCCAATCACAAATGAACTCACATGATATGTACTCACTGATAAATGGATAT
TAGCCCAGAAACTTANAATACCCCNGATATAAGATACAATTTGCAAAACT
CATGAAACTCGAGAAGAACGAAAACCAAAGTGTGGAN

NNNNNNNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCTATGGACAC
AGTACATGTCTTAAATACATAATAGCTTATTTTATATATATATATATATA
TATACTTTACATATATAGAATATATGTATAAAATTAAAGATAATGAATAT
ATAAGGTATATATATATGCATACATATAGAGTGTATATGTATATGGTGTA
TTTATGTATATGTGTGTATACACACACACACACACACACACACACACACA
CACATATATATATATATATATATATATATATATACATACACACATATCTT
AAGGCTAGAATAGAAAGTTCTAACACCTATAATAAAAGCTTCTAAACATA
TAATCCCAGGTTGCTTAGATCCACCCATTTGCCATTTGCAACTTGACTGA
GCTTTAACAGACGGAATCTCTATTCAGACATATAGGGGAAATCCTTCCGT
GAATGCAAAGCATGCTTCCTCAAACATTAAATAACATTTGACCATGGATA
AAACCTAAAGGCAGTGGTTTGGACACTTTTCAAACGATCTTGAAGTAAAT
AAAATGTTGAAGTTTTTCTAGATAATGCTATTANACATAGTATAAAAATG
CCATTGGATTTGTAATTTTTAACAATTTTGAAATTTGTGAATTGGCTTTG
GAAAATGGAAATTTGGCCCCAATTTGAAAAAAAACAAATTTAACA

Query= MSMg01no351_b22.g1 MSMg01no351_b22.g1 CHROMAT_FILE:
MSMg01no351_b22.g1 PHD_FILE: MSMg01no351_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:17 2005
         (466 letters)



>mm_chr8_102506041_102506906
          Length = 866

 Score =  685 bits (354), Expect = 0.0
 Identities = 423/476 (88%), Gaps = 48/476 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgctatggacacagtacatgtcttaaatacataatagcttattttatatatatatata 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 229 tatgctatggacacagtacatgtcttaaatacataatagcttattatatatatatatata 288

                                                                       
Query: 61  tatatata--------ctttacatatatagaatatatgtataaaattaaagataatgaat 112
           ||||||||        ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 289 tatatatatatatattctttacatatatagaatatatgtataaaattaaagataatgaac 348

                                                                       
Query: 113 atataaggtatatatatat--gcatacatatagagtgtatatgtatatggtgtatttatg 170
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atataaggtatatatatatatgcatacatatagagtgtatatgtatatggtgtatttatg 408

                                                                       
Query: 171 tatatgtgtgtatacacacacacacacacacacacacacacacacacatatatatatata 230
           ||||||||||||||||||||||||||                                  
Sbjct: 409 tatatgtgtgtatacacacacacaca---------------------------------- 434

                                                                       
Query: 231 tatatatatatatatatacatacacacatatcttaaggctagaatagaaagttctaacac 290
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ----tatatatatatatacatacacacatatcttaaggctagaatagaaagttctaacac 490

                                                                       
Query: 291 ctataataaaagcttctaaacatataatcccaggttgcttagatccacccatttgccatt 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctataataaaagcttctaaacatataatcccaggttgcttagatccacccatttgccatt 550

                                                                       
Query: 351 tgcaacttgactgagctttaacagacggaatctctattcagacatataggggaaatcctt 410
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 551 tgcaacttgactgagctttaacagacagaatctctattcagacatataggggaaatcctt 610

                                                                   
Query: 411 ccgtgaatgcaaagcatgcttcctcaaacattaaataacatttgaccatggataaa 466
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgtgaatgaaaagcatgcttcctcaaacattaaataacatttgaccatggataaa 666



 Score = 60.7 bits (31), Expect = 2e-13
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 218 atatatatatatatatatatatatatatata 248
           |||||||||||||||||||||||||||||||
Sbjct: 303 atatatatatatatatatatatatatatata 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)