NTTTTGGGTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTTTATTTTCCAGATATTGCTAGTTCTTCAAAGAA
AATATTTCAATATTTCTTGACATTTCAATCTAAACAATGTTTATTAAAAA
AAAATAGAGGCCTCACCAATACCACTATGTTCAAAAAGATGGATCGGCCT
TGTTTTTTCTTATTTCTCCTTCTAAATAAAACAAAAATTCTTGGACATTA
TATAAAAGAAATAAGAGAAAGGTGAAGTTAAGGCCAAGTGGCTTGCTTGC
CTCTCAGAGGCAAGAAGAGTGAAAAAGAAAGACAATCAGGCAGAGTGAGT
GCCTCAGCTGGGTTTGCCTTTTCCCCTCATACATTCTCCACATGGAGATA
AAGAAGGTATAAACCTGGAGACATGAAATGATTTAGAAAAAACAGAAAAG
AAGAAACAATGAAAAGTTCTAGAAATAAAATTTAGGCCACTAACCCATCA
CTTCAGTGTGAATTCACAGGCACCCACTTCATTGCTCCAGCAATAGTGGA
GAACAGATCCCAGCTTCCACACACTACAGAGTAATGAGACAATCAGTATG
ACCCTGAGTGATGTTAGNAGAGNGNTCTCCTCTCTCTCTCTCTCTCTCTG
GGTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCNCCTCCTCTTTCTC
TCCTCTTTTTGGGGGGTGTCCTCTGCTCCCTGGCCGTTTTCC

NNNNTTTTCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGA
GCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGA
GTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTA
AAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTATTAGATTATGC
TGAAAGGACCCTGATATAGCTGTCTCTTGTCAGAGTATGCCTGGGCCTAG
CAAACATAGAAGTGGATGCTCACAGTCGGCTATTGGATGGATCACATGGC
CCCCAATGAAGGAGCTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCA
ACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTT
GACTCTAGCTGCATATGCATCAAAAGATGGCCTAGTCGGCCATCACTGGA
AAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAA
CGCCAGGGCCATAAAAGGGGAGTGGGTGGGTAGGGGAGAAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGNNGGGNNNNNGNGGGGNGGGNGGGGGGNGG
GGGGNGGNNNGGGNNGNGGTATTTTTGTTGGTTATTGTTTGTGNNGGTAT
TTTTTTGTGTTTNTTGGTTTGTGTTGTNTTTTTTTTTTTTTTTTTTN

Query= MSMg01no351_n15.b1 MSMg01no351_n15.b1 CHROMAT_FILE:
MSMg01no351_n15.b1 PHD_FILE: MSMg01no351_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:12 2005
         (497 letters)



>mm_chr8_38922674_38923570
          Length = 897

 Score =  946 bits (489), Expect = 0.0
 Identities = 492/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttattttccagatattgctagttcttcaaagaaaatatttcaatatttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttattttccagatattgctagttcttcaaagaaaatatttcaatatttctt 264

                                                                       
Query: 65  gacatttcaatctaaacaatgtttattaaaaaaaaatagaggcctcaccaataccactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacatttcaatctaaacaatgtttattaaaaaaaaatagaggcctcaccaataccactat 324

                                                                       
Query: 125 gttcaaaaagatggatcggccttgttttttcttatttctccttctaaataaaacaaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcaaaaagatggatcggccttgttttttcttatttctccttctaaataaaacaaaaat 384

                                                                       
Query: 185 tcttggacattatataaaagaaataagagaaaggtgaagttaaggccaagtggcttgctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttggacattatataaaagaaataagagaaaggtgaagttaaggccaagtggcttgctt 444

                                                                       
Query: 245 gcctctcagaggcaagaagagtgaaaaagaaagacaatcaggcagagtgagtgcctcagc 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gcctctcagaggcaagaagagtgaaaaagaaagacaagcaggcagagtgagtgcctcagc 504

                                                                       
Query: 305 tgggtttgccttttcccctcatacattctccacatggagataaagaaggtataaacctgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggtttgccttttcccctcatacattctccacatggagataaagaaggtataaacctgg 564

                                                                       
Query: 365 agacatgaaatgatttagaaaaaacagaaaagaagaaacaatgaaaagttctagaaataa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agacatgaaatgatttagaaaaaacagaaaagaagaaacaatgaaaagttctagaaataa 624

                                                                       
Query: 425 aatttaggccactaacccatcacttcagtgtgaattcacaggcacccacttcattgctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatttaggccactaacccatcacttcagtgtgaattcacaggcacccacttcattgctcc 684

                        
Query: 485 agcaatagtggag 497
           |||||||||||||
Sbjct: 685 agcaatagtggag 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)