NGGGGGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCTCTGTTACGTCCCCAAATTCTACCTTCCAAAATC
GGTCTGTTCCAAAAGGGGTTTAGCAGAAGCTTAAAAGACAGACTTTCATT
CAGTTCATTCTATCACATAAGGGACTCTTAACTGTACTCATTTAAGGTGC
TTAATGTCTCAAAAAATTAATCATGTACTATCTGCACGTCCTTGCACACT
TCACTGATCCATTCCTTCTTGGCCTCTGCCAAGTGTACGTTCAACAAGAG
GAGACTCTACAGGTTGAAAATGACTGCAGAAGACACTTCTGTGTTAGTCA
GAATCAACAAAACATCCATTGCCTTCTCCATAACTGCATTCATATCTTTC
TGTGTCAGTTCCTAGAGTTATGAAGAAACACCCAAAGTGTTTTCTCCTAT
AGTTTTTGAAGTCAAGAGGAAACTGGAAAGCTTTGAAAATTTGGGGTTTT
TTAAATATTTTAAAGTGTTGGGATCTGAATATGTAGCTCAGTGGGAAAGC
GTTTGTCAAGAATATATAAAGCCCTGCGGTGGATCCCAGATTATACATAA
TTTTCATTTCAAAACTTTTTATTATGAAAATTCTAGAACAACACTGCCTT
CAAAAGTCCTCCGCACCAATGTCAAAAAGATCAACATGAGGTTCTCCTTG
TTTCTTTGAAAACCCTCCATTTCAAAGGGTAAATAAC

NNNCCCCGATGATAGTGNGTAGGCCTGGNGGNCGCCTGGTTTCGTACCGG
AGGTNGAACTATANAAGGTTTCAAAAAACTCATTTAATAGAAGTGAAACA
ATGTTACAAAGAAGTTACTTACCTTTTTGTGCCCTTTAGCAAGCCTTTAT
ACAAAAGCTTAATGTGTAAATTTGTTTGTTTGTTTTAAAGCAGAGTCTCA
CTCTTAACCAAGGCAGACCTGTAACTCACTATGTAAACCAGGCCAGCCTA
AAACTTACAATGTGTGTGTCCTGTATATGTATTTATCCGTGTTTGTATAT
ATGTACATATGTATGATTGTGTTGCATAAATGNATGCATGTATACATGTA
TATATGTTGTATATATATATATATATATATGCGTGTGTGTGTGTGTGCGT
CTNCNTCTNTTTNNCTCTCCCTCTCCCTCCTCTTTTTTTTTTTCTCCCTT
CTTTTTTTTTTTTCCTTTCCCCTTTCTTTCTTNTCTTTTTTTCCCTTTTT
TTCCCCTCTTTTTTTCCCCTTTTCCCTTTTTTTCTTTTTTCCTTTCCNTT
TTTTCCTTTTTTNCTCTTTTCCTCTTTTCCCCTTTTCTTCCTTCCTTTTC
TTTTCCTCTTTTCTCCTTTTCTTCTCCTTTCTCCTTCTCCTTTCTTCTTT
TGTCTCTTTTNCTTCTTTTTTTTTTTTTTTTNCTCTTCTCTTTCCTCCCC
CCCCCTCCTTTTTTTTTCTTTCCCCTCTTCTTCCTTTTTTTTTTTTTTTC
TTN

Query= MSMg01no351_o01.b1 MSMg01no351_o01.b1 CHROMAT_FILE:
MSMg01no351_o01.b1 PHD_FILE: MSMg01no351_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:14 2005
         (518 letters)



>mm_chr8_59774203_59775120
          Length = 918

 Score =  909 bits (470), Expect = 0.0
 Identities = 500/510 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctctgttacgtccccaaattctaccttccaaaatcggtctgttccaaaaggg 64
           ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 205 gaattcctctctggtaggtccccaaattctaccttccaaaattggtctgttccaaaacgg 264

                                                                       
Query: 65  gtttagcagaagcttaaaagacagactttcattcagttcattctatcacataagggactc 124
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttagcacaagcttaaaagacagactttcattcagttcattctatcacataagggactc 324

                                                                       
Query: 125 ttaactgtactcatttaaggtgcttaatgtctcaaaaaattaatcatgtactatctgcac 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaattgtactcatttaaggtgcttaatgtctcaaaaaattaatcatgtactatctgcac 384

                                                                       
Query: 185 gtccttgcacacttcactgatccattccttcttggcctctgccaagtgtacgttcaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtccttgcacacttcactgatccattccttcttggcctctgccaagtgtacgttcaacaa 444

                                                                       
Query: 245 gaggagactctacaggttgaaaatgactgcagaagacacttctgtgttagtcagaatcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggagactctacaggttgaaaatgactgcagaagacacttctgtgttagtcagaatcaa 504

                                                                       
Query: 305 caaaacatccattgccttctccataactgcattcatatctttctgtgtcagttcctagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaaacatccattgccttctccataactgcattcatatctttctgtgtcagttcctagag 564

                                                                       
Query: 365 ttatgaagaaacacccaaagtgttttctcctatagtttttgaagtcaagaggaaactgga 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 ttatgaagaaacacccaaagtgttttctcctatagtttttgaagtcaagaggaaactgaa 624

                                                                       
Query: 425 aagctttgaaaatttggggttttttaaatattttaaagtgttgggatctgaatatgtagc 484
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 aagctttgaaattttggggtttttttaatattttaaagtgttgggatctgaatatgtagc 684

                                         
Query: 485 tcagtgggaaagcgtttgtcaagaatatat 514
           ||||||||||||||||||||||||||||||
Sbjct: 685 tcagtgggaaagcgtttgtcaagaatatat 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)