BAC Information

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BAC

Clone NameMSMg01-352C01
Chromosome8 (Build37)
Map Location 36,558,205 - 36,558,581
singlet/doubletsinglet
Overlap geneThex1
Upstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
Downstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C01.T7 (MSMg01no352_c01.b1)MSMg01-352C01.TJ (MSMg01no352_c01.g1)
ACCAG463332AG463333
length735731
length of high quality
(start - end)
189 (53 - 241)377 (83 - 459)
definitionCHROMAT_FILE: MSMg01no352_c01.b1 PHD_FILE: MSMg01no352_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:33 2005CHROMAT_FILE: MSMg01no352_c01.g1 PHD_FILE: MSMg01no352_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGAGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGTCTCGA
AACACAAACAAGAAGAAGATGAAGATGAAGAAGGAGGAGGAGGAGGAGGA
GCAGCAGCAGAAGCACTCATTTTAATTACACCAAGAAGGAAACTATGAGA
TCAGATACAATGGACTAAGATGTGCTTCCCTCAACATTTGGANNATACTA
AAAATGGGCTCTATTTCCCCTTGGAAAGGGTGGGAGAATAGACGTAAACT
GGGCCTGGCTGTCACCTACAATGGAGAAAACCATGGGGAAGTTTCTTTTT
TAGGGNAAATTAAACCGGGAAATTTCTGGGGCCCAACTGGGGGGGGGGGC
CAAAACCCCCCGCCGAAATTTNTTTTNGNNNNNNNCNCNAGCGAGGGAGT
NNNAANTTANCCTCCCCCCTTNNTTCAAANCCACCCCAAAAAAAAAAGAG
ATTNCNCAGGGAGAAACAAACCCCCCCCTACCGTGGGGGGGGGGGGGGGG
GGGACAGAGTCTCCCGGTCCGGGGCGCCCGTGCTAAAAAGAAGAGGAGGG
GGGTTTGTNTGTGTTGTTTTTNTGCCTCTTCCACCNNCGCCCCCATTCTG
GGGCTNCTCCNNCCCTTCTCTTNNNNNNNNNNTGGGGCNNNNTCGGGNNN
GNNNNGGCGGCNNAGGCGCGCCAGGCGAGCGGGGG
GTGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTCGGAACTTCCCGC
CTGACCTCCTCCCTCTCGAGGCCGACGATGCTCGCCCCGACTAGGACGGA
GCAGGGGAGCGAGCGAGGCCGCCCCGCACGCGCGCGCGAGCTCCCGACCT
CACCTCCACGCTCAGCGGCCGGGACTCCTCACACTCCGGCCGCGGCGTCT
TCTGCTGCGCCGCGTCGCCGCCACGCTCCCGGCCCCGCTCGTCCTCCATG
CCGCCTCTCGCGGGCCGCGAGACGGCCGCGGACGCTCACTGTCGGTCCAC
CGAGACCCGCGGGAAGCCGCCTCGCTCTCTCCCTTGAAAAACTACCGCGC
TTCACGTTCCCGCGGCGGTCGCCACACAAACTCCGCCGGACGCCTCCTAC
TTCCGGGAGCGTGTGGCGNCGTCACGCCGCGCATGCGCCGTGTTCGGTTC
CCCCCTTTTCTCTCCCCGGGGCGCGTGTTATTATGCCGTTGTTTCACCTC
CCCTCCCTTCTATCCCTATTCCTAATCCCTTTCTTTCCCCTCTCCCCCCC
TAACTTGTTTTCCCGCTTCCTTTTCTTGGTCAGTCCCTCTCTTATCCCTC
CCCTTTACCGCTTTCCCCCCCCCCCCCTTCCGCCCCTTCCCCTCCCCTAT
TTCCCTCCCCCCTTCTTCTTTCTCTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c01.g1 MSMg01no352_c01.g1 CHROMAT_FILE:
MSMg01no352_c01.g1 PHD_FILE: MSMg01no352_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:33 2005
         (377 letters)



>mm_chr8_36558005_36558781
          Length = 777

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcggaacttcccgcctgacctcctccctctcgaggccgacgatgctcgccccgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcggaacttcccgcctgacctcctccctctcgaggccgacgatgctcgccccgact 260

                                                                       
Query: 61  aggacggagcaggggagcgagcgaggccgccccgcacgcgcgcgcgagctcccgacctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggacggagcaggggagcgagcgaggccgccccgcacgcgcgcgcgagctcccgacctca 320

                                                                       
Query: 121 cctccacgctcagcggccgggactcctcacactccggccgcggcgtcttctgctgcgccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccacgctcagcggccgggactcctcacactccggccgcggcgtcttctgctgcgccg 380

                                                                       
Query: 181 cgtcgccgccacgctcccggccccgctcgtcctccatgccgcctctcgcgggccgcgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtcgccgccacgctcccggccccgctcgtcctccatgccgcctctcgcgggccgcgaga 440

                                                                       
Query: 241 cggccgcggacgctcactgtcggtccaccgagacccgcgggaagccgcctcgctctctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggccgcggacgctcactgtcggtccaccgagacccgcgggaagccgcctcgctctctcc 500

                                                                       
Query: 301 cttgaaaaactaccgcgcttcacgttcccgcggcggtcgccacacaaactccgccggacg 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 cttgaaaaactaccgcgcttcacgttcccgcggcggccgccacacaaactccgccggacg 560

                            
Query: 361 cctcctacttccgggag 377
           |||||||||||||||||
Sbjct: 561 cctcctacttccgggag 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)