BAC Information

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BAC

Clone NameMSMg01-352C19
Chromosome8 (Build37)
Map Location 121,641,896 - 121,642,333
singlet/doubletsinglet
Overlap geneCdh13
Upstream genenone
Downstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C19.T7 (MSMg01no352_c19.b1)MSMg01-352C19.TJ (MSMg01no352_c19.g1)
ACCAG463367AG463368
length767775
length of high quality
(start - end)		---438 (110 - 547)
definitionCHROMAT_FILE: MSMg01no352_c19.b1 PHD_FILE: MSMg01no352_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:37 2005CHROMAT_FILE: MSMg01no352_c19.g1 PHD_FILE: MSMg01no352_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCATTTTCGCTTTGAGACTTTGTAGATACCAATTTTGTTACCA
ATTTTGCTAAGATAATGCCTGACACATTTTGTGTTTAACGGGTTGACTTT
ATGTCTGCACACTTGTACAGGTTGAGCCTGGATAGTTGGCTCGGTAGTTA
TCGAGCGCTTGCTGCCCTTGCTCACCATTGTACGATCTGTTCTCAACTTC
CATGTTGGGGGCCTCCCAACAATTTCTAAAGCCAGCTCCACGGCGGCTGG
CACCCTCTTATATCTTCTTCTGTTACTTCCCTCATGTATGCCCAGACAGA
CACACACACGCAGACCCCCTCGCCCGCACTTACCTTCCTTCCCCACGAAC
CCTGTGATCTTTATAGAGCAACAATCGCTCCCATTATGCTAGAATTTGGT
TAAGACGCACTATGGACACCTATGCTGAGTACACCCTGCCTTGGCTCTCC
CCTAGGCCGTAGCTTTTGCATGACCATCTTTCTTATAGATGCCAATGATC
TCCACCGTTCACTGCCGTGCCATTATAGCCCCCGGGAAGATTTCCTGCAC
ATTGGATATATGTAAATGCCTCTGGCGCCCTATTAAAGTTCCCGCCTGGG
GCCCCTTCTGGACCCACTCCCTCTTTACTGTCAATTCCCCTAACTGCCCA
TAAAACCATTTTTTGAAACAACTGACTGGCCCTTTCTCCGCCCTTTAAAC
CTGCCTCCCTTAATTCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGACGGGAAGCCACACCTACTGGTCCA
TTTCTCTGCTAATGTTTCCTTCTTCCTGGGCTCCTGTGAGCCATCAAGTT
ACCTCCAATTTCCTGATAGCATTTTGAGAAATTAAAACTTTAGGAGAAGC
AAATTTTTTCGCCCCGTCATGTTGTGTATATTTAATATTCCATTAGATTT
GGCTCACTTATCTCTATAATTTCAAACCGTACTGTATCATTTATGGGCCA
CAGAAGGATTTTCATAGGCAGGTGGAGTCCAACGGTGGAACAGGGTGTTT
ATCAGTTTCTTCAAAATGTCATCTAAATTCATTTTTCACATTGTAAGATT
GGCACCGTGTACTTTCTCCATCTCAGAGAGCAAACAGTCGCACACAGCCA
ACTATCCCCTCTAATATGAATAAAAACGCCTCTCTACTTTATCTGTTCTA
AACCAATATCCCTGAAGAATGTAAATATCTCACTCTTTTTCTTTTGTTTC
TTACAGAGCANGCCCAGGGGTAGCTCATCAGATACATCTCTGTCATCTCC
TCATACAGCTCCTAAGGTGAGTCAAGAAATCAAAACCCACCCTGGGGTTG
GAAACCAGCACGCGCTCTTAACAATTTTTTTTGGGAAAGGTCCCCCCGAA
CCCCGGGAAAAGTCCCGTCCTGCCCAACCCTGGTGGGCCCCCAGGTCTTG
GCTCTGGTCCCCCTTCCCTACCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c19.g1 MSMg01no352_c19.g1 CHROMAT_FILE:
MSMg01no352_c19.g1 PHD_FILE: MSMg01no352_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:37 2005
         (438 letters)



>mm_chr8_121641696_121642533
          Length = 838

 Score =  816 bits (422), Expect = 0.0
 Identities = 434/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgtttccttcttcctgggctcctgtgagccatcaagttacctccaatttcctgatag 60
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 638 taatgtttccttcttcctgggctcctgttagccatcaagttgcctccaatttcctgatag 579

                                                                       
Query: 61  cattttgagaaattaaaactttaggagaagcaaattttttcgccccgtcatgttgtgtat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cattttgagaaatgaaaactttaggagaagcaaattttttcgccccgtcatgttgtgtat 519

                                                                       
Query: 121 atttaatattccattagatttggctcacttatctctataatttcaaaccgtactgtatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atttaatattccattagatttggctcacttatctctataatttcaaaccgtactgtatca 459

                                                                       
Query: 181 tttatgggccacagaaggattttcataggcaggtggagtccaacggtggaacagggtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttatgggccacagaaggattttcataggcaggtggagtccaacggtggaacagggtgtt 399

                                                                       
Query: 241 tatcagtttcttcaaaatgtcatctaaattcatttttcacattgtaagattggcaccgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tatcagtttcttcaaaatgtcatctaaattcatttttcacattgtaagattggcaccgtg 339

                                                                       
Query: 301 tactttctccatctcagagagcaaacagtcgcacacagccaactatcccctctaatatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tactttctccatctcagagagcaaacagtcgcacacagccaactatcccctctaatatga 279

                                                                       
Query: 361 ataaaaacgcctctctactttatctgttctaaaccaatatccctgaagaatgtaaatatc 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 278 ataaaaacgcctctctactttatctgctctaaaccaatatccctgaagaatgtaaatatc 219

                             
Query: 421 tcactctttttcttttgt 438
           ||||||||||||||||||
Sbjct: 218 tcactctttttcttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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