BAC Information

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BAC

Clone NameMSMg01-352P12
Chromosome8 (Build37)
Map Location 83,521,991 - 83,522,272
singlet/doubletsinglet
Overlap geneUsp38
Upstream geneHhip, LOC546075, Gypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518
Downstream geneEG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P12.T7 (MSMg01no352_p12.b1)MSMg01-352P12.TJ (MSMg01no352_p12.g1)
ACCAG463963AG463964
length787782
length of high quality
(start - end)
302 (50 - 351)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no352_p12.b1 PHD_FILE: MSMg01no352_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:42 2005CHROMAT_FILE: MSMg01no352_p12.g1 PHD_FILE: MSMg01no352_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATGATACCCACCTGATGTGGCCATACTACAGCAGGTGCGT
ATAGTACCACATTGTCAGCTTCTAGGCTGGTGTTCCAGAATTGGGTGGTT
GGAAAGGAGTTGGCACAAAAAGTGCACAATTTAAATTTATGATTTAAAAT
TTTAATCTTTTATTAATTAAAGCTTTCTTGGATAACTCATACACACACAT
ACACACTCTACTTACTTTCATGCCCTACCCTCTCTCTATATTTTAACTTT
ATGCTTTTGGATATTTCCCCTGCACATATATCCATGTACCACATGTGTGC
CCGGCCTGGTGCTCACAGAGATCAGAACTGTCTATCAGCCTCCCCATAAG
TAGAGTTCCAGTCACCCCCCCCACTATTTGTGTACTGGTAAATAATCGCA
CATCCACACTTCTAGCACCCTATCTCTTACCCGCTGTATTACATCACTCC
CCCCCCTGCACCCACTTATTCCACTACCCCTTTCTCCCTCCTTCTACGAA
CTTCTCTTCTTTTTTCCCCTCCCTCCTCCTTTTTTCCCCTTCCCCTTCCC
CCCCTTTTTTCTTCCCCCCCTTCTTCCTTCTCACCTTTTCCCTTCTTTTC
TCCCTATTTCCTCTCCATTCTTTTCCCCTACTTTTTCTCTTATCACCCCC
CCCCCCTTTTTATCCTACCTCGACTCCTCTTTCTTTCCTCCTCCCATCTT
CTTCATCTTCTTTCCTATCACCTCTTCCCTATCCCTG
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTTAGTTCTATA
CCCCATTTTTTGATTGTTTGGGTTTTTGGTGATTAACTTCTTAAGTTGTT
TATATATTTTTGATATTGGCTCTCTATTGGATATGGGGTTACTGAAGATT
TTTTCCCAATCTGTAGGTTGCTGATTTGTCTTATTGACTATGTCCTTTGC
CTTACAGAAGCTTTCCAGTTTCATGAGGTCCCATTTATCAATTCTTACTC
TTAGAGAATGAGCCATTGGAGTTCTGTTTAGGAAATCTCCCCCTGTGTCA
ATGAGTTCAAGGCTCTTCCCCACTTTCTCTTCTATTATATTCAGTGTATC
TGGTCTTATATTGATACCCCCCATCCTTTTGGCCTTTACCTTTGTTCCTT
GTGTCATCCCCGTGCCTTTTCCCGCTCTTTCTCTCTTCTTCTTCCCCCCC
TCCCCTTCTTTTTTCTCGTTCCCTTTTTCTCTTCCCTTTCCCTCTATTTT
CCCGTTTCCCTCTCTCTTCTCCCCCCCTTGCGTTTTCCTTCTTCTCTTTC
CCTTTCCCCCCCTTTTTCCCCCTTTTTCCCCCTTTCCCCTTTCTTTCCCC
TCTTTACGTACCCCTTTTTTCTTTTTTCTCCCCCTCCCCCCCCTTTCCCT
CCTCGCTTTTTCATCTCCCCCCGCCTTTTTTATTTTCTCCCCCTTCTCCT
TTCCTTCCCCCTTTTCCTCCTTCTCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p12.b1 MSMg01no352_p12.b1 CHROMAT_FILE:
MSMg01no352_p12.b1 PHD_FILE: MSMg01no352_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:42 2005
         (302 letters)



>mm_chr8_83521771_83522472
          Length = 702

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  acctgatgtggccatactacagcaggtgcgtatagtaccacattgtcagcttctaggctg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 acctgatgtggccatactacagcaggtgcgtatagtaccacattgtcagcttctaggctg 280

                                                                       
Query: 81  gtgttccagaattgggtggttggaaaggagttggcacaaaaagtgcacaatttaaattta 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgttccagaattgggtggttggaaaggagttggcacaaaaagtgcacaatttaaattta 340

                                                                       
Query: 141 tgatttaaaattttaatcttttattaattaaagctttcttggataactcatacacacaca 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgatttaaaattttaatcttttattaattaaagctttcttggataactcatacacacaca 400

                                                                       
Query: 201 tacacactctacttactttcatgccctaccctctctctatattttaactttatgcttttg 260
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 401 tacacactctacttactttcatgccctaccttctctctatattttaactttatgcatttg 460

                                                     
Query: 261 gatatttcccctgcacatatatccatgtaccacatgtgtgcc 302
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gatatttcccctgcacatatatccatgtaccacatgtgtgcc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)