BAC Information

Click to search

BAC

Clone NameMSMg01-352P18
Chromosome8 (Build37)
Map Location 115,542,670 - 115,561,483
singlet/doubletdoublet
Overlap genenone
Upstream geneTerf2ip, LOC672498, LOC100042040, Cntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P18.T7 (MSMg01no352_p18.b1)MSMg01-352P18.TJ (MSMg01no352_p18.g1)
ACCAG463975AG463976
length788778
length of high quality
(start - end)		370 (47 - 416)453 (78 - 530)
definitionCHROMAT_FILE: MSMg01no352_p18.b1 PHD_FILE: MSMg01no352_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:43 2005CHROMAT_FILE: MSMg01no352_p18.g1 PHD_FILE: MSMg01no352_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,561,122 - 115,561,483)(115,542,670 - 115,543,122)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTGACTTCTAAATGCTAGCTCTCTAAGTTCCTATCATTTTTAA
AGATGTCTTGATTAAGACATAGGAGGGAATTAAGCATATTCAAGTTAGAT
TAATGAAATACTGATTCGAATCAAGCATATCTTACAATATTGAGAATTTC
TTCATATTGACTTCCTTTCCTTAAAATTCATGTTCCTTATTCCTTGTGTT
TAATGTGATTATTTTACAGAAAATACTCAGATAGCATGTTATAGAACTAC
ACATGTGGCTGCCTTCTATCCGTAGCAATATTTTGAAATTATGTTTTCAT
TTTCCATCAACTCATTTTTCGGAGAGAAAAATGTGTATATTGCCATCATT
ATAACACTGCAGNGCCCCCCCCACTATTGAGAGTGAAGTGCTGGCCTTGA
CAAAAATAAATGTTTCTAACAAATGACATACTTTGAATTTTCCTTTCAAC
TGAATTTGTATTTTTATTTTACATTTTTTATTCTCACATGATGTTATGAA
ATAGATACTCCGAGTAGTTATACTGAATTCATCCTCGCCATAAACCTAAA
TGTAATCTTTTACGCGTTTCCCCCATAAATCCTCCTTCCAGTTTACAAAG
GCAAATCTCTCTGTCTGGTGGCCTCTTCGTACAATTGGTTTGACTCCATT
CTAATTATTCTCACTGCCTTTTTTTTCTTTTTGCTCATAATTGTTCACTC
TTTCTCATAACCTAAATTTCGCTACCCTTCCTTTACTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATATTTCATCTAAGAAAGAAAA
CGGAAAATTTACACAAACTCTGACCTTTAGACCAAACCTGGTAGGAATTT
TAAAAAAGTAAAACTCTGGGTAAAAAGGAGGCTCATGAGGTAAAGGTGTT
TGCCACAAGCCTGAGGACCTGATATCAATTCATCACCCACATGTGGAAGG
AGAGAACTGACTTCTACAAATTGTTCTCTGACCTTTATACACAAACCACT
GTGGCATGTCTCAATGCATATAAACACATATATGTATATACACATACAGG
CACACAAACAACAAATGAGTACAAGCAAAGAAAAAGAATAAAGAAAAGAA
AAACCAAAAAGCCCAAATTGCTAAATAGTAGCAAAACAAATTCATAATTG
TATTCATGATTAAGGGCAGAATATTCAGGGGACCAAAACCAGCTTAATAT
GCAAAATATCTTTCAACACAATTTATTATTAAAATGGAACAATGAAGACA
TAAGGTTAGGGGGTGGGCTAATTTGGCAGAAAGCTTGCTTACCATTCAGG
AAATCTACACTTGATCTCCCACATTGCGGGATTTTTGTGTATACCGGATT
CCCCTATATAAACGGCGTATCTTCCCTTTACTTATTTTCCGGCTTCCCCT
CTTTTTCTTTTTCATTTCCTTACCCTCGTCTTTTTTTTTTTCCCCTTTCT
TCTCCTTTCCCTTTATCATTCTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p18.b1 MSMg01no352_p18.b1 CHROMAT_FILE:
MSMg01no352_p18.b1 PHD_FILE: MSMg01no352_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:43 2005
         (370 letters)



>mm_chr8_115560918_115561687
          Length = 770

 Score =  677 bits (350), Expect = 0.0
 Identities = 359/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgacttctaaatgctagctctctaagttcctatcatttttaaagatgtcttg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaattcactgacttctaaacgctagctctctaagttcctatcatttttaaagatgtcttg 507

                                                                       
Query: 65  attaagacataggagggaattaagcatattcaagttagattaatgaaatactgattcgaa 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attaagacataggatggaattaagcatattcaagttagattaatgaaatactgattcgaa 447

                                                                       
Query: 125 tcaagcatatcttacaatattgagaatttcttcatattgacttcctttccttaaaattca 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 tcaagcatatcttacaatattgagaatttcttcatattgacttccttcccttaaaattca 387

                                                                       
Query: 185 tgttccttattccttgtgtttaatgtgattattttacagaaaatactcagatagcatgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgttccttattccttgtgtttaatgtgattattttacagaaaatactcagatagcatgtt 327

                                                                       
Query: 245 atagaactacacatgtggctgccttctatccgtagcaatattttgaaattatgttttcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atagaactacacatgtggctgccttctatccgtagcaatattttgaaattatgttttcat 267

                                                                       
Query: 305 tttccatcaactcatttttcggagagaaaaatgtgtatattgccatcattataacactgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttccatcaactcatttttcggagagaaaaatgtgtatattgccatcattataacactgc 207

             
Query: 365 ag 366
           ||
Sbjct: 206 ag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_p18.g1 MSMg01no352_p18.g1 CHROMAT_FILE:
MSMg01no352_p18.g1 PHD_FILE: MSMg01no352_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:43 2005
         (453 letters)



>mm_chr8_115542470_115543322
          Length = 853

 Score =  837 bits (433), Expect = 0.0
 Identities = 448/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatttcatctaagaaagaaaacggaaaatttacacaaactctgacctttagaccaaac 60
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatattgcatctaagatagaaaacggaaaatttacacaaactctgacctttagaccaaac 260

                                                                       
Query: 61  ctggtaggaattttaaaaaagtaaaactctgggtaaaaaggaggctcatgaggtaaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtaggaattttaaaaaagtaaaactctgggtaaaaaggaggctcatgaggtaaaggt 320

                                                                       
Query: 121 gtttgccacaagcctgaggacctgatatcaattcatcacccacatgtggaaggagagaac 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gtttgccacaagcctgaggacctgatattaattcatcacccacatgtggaaggagagaac 380

                                                                       
Query: 181 tgacttctacaaattgttctctgacctttatacacaaaccactgtggcatgtctcaatgc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 381 tgacttctacaaattgttctctgacctttatatacaaaccactgtggcatgtctcaacgc 440

                                                                       
Query: 241 atataaacacatatatgtatatacacatacaggcacacaaacaacaaatgagtacaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atataaacacatatatgtatatacacatacaggcacacaaacaacaaatgagtacaagca 500

                                                                       
Query: 301 aagaaaaagaataaagaaaagaaaaaccaaaaagcccaaattgctaaatagtagcaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaaaagaataaagaaaagaaaaaccaaaaagcccaaattgctaaatagtagcaaaac 560

                                                                       
Query: 361 aaattcataattgtattcatgattaagggcagaatattcaggggaccaaaaccagcttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaattcataattgtattcatgattaagggcagaatattcaggggaccaaaaccagcttaa 620

                                            
Query: 421 tatgcaaaatatctttcaacacaatttattatt 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 tatgcaaaatatctttcaacacaatttattatt 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |