NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCTGGGATGAACTTTCTATGGCACTAGGATGTGGCTCAC
AGTTTGTGCGAGGCCCTGGATTCAAGCCCGGCAGTGGCGCTCCGAAACCC
AAACTTAATTATCTCCGAAAAATCATCTACCCAGAGTTTATTGCAACATG
GTTTGTTGCCTGTCGGTCTGGTCCCTGGCGCACAGCAGCCTTCCGTCATT
ACCTCGCTCCTATCACCACTCATTCATTGTTATACAATACTGAGCCACAC
AGAGCTGCTAAGCAAAAAGTTAAGTCTAAAGTTTACAGCTGCGTTCCAAG
ACCAAAGAATACCTTTATCAGATAGAGGCTCGTGCCTAAATGTGGTCAGC
GGGAGTATTTTGTGGAGATACGAATGTTTTAAATGTTGCTTTTTAATTGT
TTAAAATTAAAAATCAGGAAAATCGCATAATATCAAAGTTCAGGTTCGTG
TTGACAGAGTTGTCCCAGCAATATCTTTCCTCATAGTGCAAGTGGTTGTC
CAGAGCAGGACAGCTGATTTCTGTGGAAGGGGCTCTCTCTCTCTCTCCTC
TTCCTCCCAGACCTCCCCCTCCACAAAACCCATTGCATCTGAGCATGCCA
AGGTTTCATCCTGGGAGATCTTTAGCCTTTGACAAGAGTCTCTGAATAGC
CATACAGTAACTAGGCTTCTCTGAGACCACTCTCATCACCTAGACCCCAA
N

NNCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTTAAGGCTGTACTT
GAATGTCGCTCACATCACCAACGGATTTTACCTCCATAGTAGCTAAGCTA
AGAGTTGACAGTTCTGCTGCACCAAGGAATTAATTGTAGGCACGATTTTT
GGATACAGATTTCCTGAACAGTCAAAGCTATTTGAATTGAGTGATTATCG
TCATTCTCAGCCCACAGGGAACTGGTTGCATTCATTTAAGAAATGGTGTG
TGTATTAAGATGATCTATCCATGAAGTCATTCATCAACTGTTTCAGAGAT
CAGTGGTTCTGCTTGGAGGGTGGCACAGACGTTAGGTGAGGGTAAGATTC
TGGTTCATTGGCTGTGATGATTTTGAAAAGCATTCATCTCAGTATAAGAG
TAACTTATAAAGTCCTCTTCTTTGAAATTGATACAGTAACTATAAATATT
CAGCAAAGCCTTCAGCCTCACTCTTTGCTATTCTCTTACAAGCCCCATCC
CAAATTAATTGTTTACATTTCGCTTGGCTGTATAAAAAATTTTGAATTAT
GTAACTGTTCTGAAAACCATAGTACAGTGTAAAAAACATCTTATAAACAA
TCCTACTATTACATAGGCTGATATAAGATAGCCCTGATTTCTAGAATCCC
TTGCGGTTCACAGCCCGAACCTGTCCTGTTCTACAAGCCTAAGTGGCTAC

Query= MSMg01no353_a04.b1 MSMg01no353_a04.b1 CHROMAT_FILE:
MSMg01no353_a04.b1 PHD_FILE: MSMg01no353_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:45 2005
         (580 letters)



>mm_chr8_28547618_28548588
          Length = 971

 Score =  830 bits (429), Expect = 0.0
 Identities = 517/565 (91%), Gaps = 35/565 (6%)
 Strand = Plus / Minus

                                                                       
Query: 20  gaactttctatggcactaggatgtggctcacagtttgtgcgaggccctggattcaagccc 79
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gaactttccatggcactaggatgtggctcacagtttgtgcgaggccctggattcaagccc 909

                                                                       
Query: 80  ggcagtggcgctccgaaacccaaacttaattatctccgaaaaatcatctacccagagttt 139
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 908 ggcagtggcgctccgaaacccaaactcaattatccccgaaaaatcatctacccagagttt 849

                                                                       
Query: 140 attgcaacatggtttgttgcctgtcggtctggtccctggcgcacagcagccttccgtcat 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 attgcaacatggtttgttgcctgtcggtctggtccctggcgcacagcagccttccgtcat 789

                                                                       
Query: 200 tacctcgctcctatcaccactcattcattgttatacaatactgagccacacagagctgct 259
           |||||||||||||| ||||             ||||  ||   ||||||||||||| || 
Sbjct: 788 tacctcgctcctataacca-------------atac--ta---agccacacagagccgcc 747

                                                                       
Query: 260 aagcaaaaagttaagtctaaagtttacagctgcgttccaagaccaaagaatacctttatc 319
           |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 746 aagcaaaaagttaagtctaaagtttacaactgcgttccaagaccaaggaatacctttacc 687

                                                                       
Query: 320 agataga----ggctcgtgcctaaatgtggtcagcgggagtattttgtggagatacgaat 375
           |||||||    |||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 686 agatagattgaggctcgcgcctaaatgtggttagcgggagtattttgtggagatacgaat 627

                                                                       
Query: 376 gttttaaatgttgctttttaattgtttaaaattaaaaatcaggaaaatcgcataatatca 435
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 626 gttttaaatgttgctttttaattgtttaaaattaaaaatcaggaaa-tcgcataatatca 568

                                                                       
Query: 436 aagttcaggttcgtgttgacagagttgtcccagcaatatctttcctcatagtgcaagtgg 495
           |||||||||||      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagttcaggtt------gacagagttgtcccagcaatatctttcctcatagtgcaagtgg 514

                                                                       
Query: 496 ttgtccagagcaggacagctgatttctgtggaaggggctctctctctctctcctcttcct 555
           |||||||||||| |||||||| ||||||||||||||||||||||||      ||||||||
Sbjct: 513 ttgtccagagcaagacagctgctttctgtggaaggggctctctctc------ctcttcct 460

                                    
Query: 556 cccagacctccccctccacaaaacc 580
           |||||||||||||||||||||||||
Sbjct: 459 cccagacctccccctccacaaaacc 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 971
Length adjustment: 10
Effective length of query: 570
Effective length of database: 961
Effective search space:   547770
Effective search space used:   547770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)