BAC Information

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BAC

Clone NameMSMg01-353B23
Chromosome8 (Build37)
Map Location 102,705,229 - 102,705,748
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353B23.T7 (MSMg01no353_b23.b1)MSMg01-353B23.TJ (MSMg01no353_b23.g1)
ACCAG464078AG464079
length769772
length of high quality
(start - end)
524 (50 - 573)508 (80 - 587)
definitionCHROMAT_FILE: MSMg01no353_b23.b1 PHD_FILE: MSMg01no353_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:54 2005CHROMAT_FILE: MSMg01no353_b23.g1 PHD_FILE: MSMg01no353_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTAATGAAAATGTGTGGTATATAAATTTTCTAGGCAAAG
GTAGAGTCATTTGAAATTTTACTATAGTTTTGTTTGCATTAAGAAATTAC
ACTTATTAGTGTAAATCATATCAAATCTAAATTAGCATAATAGAAGCTTC
CCTGCAATAAAGAGCTTCAGTTCTATTGTTACATGGCCTTATTTCTATGA
AACTTTATTAGCAATGAATATCAAGCAGGCCAAGAGGTGTAATATATTAC
TTAATGTGGTATTGTAGAATGGAAAACATACTCAATGAATATGCAAACTC
AATTTCCAAATATGAAACATAGCTCCACAAATACGTGTTCAGTAGTACCA
ACATGGTAACTGCATTATATTTTCTTAGACGTTTATACCACATATACCTG
TAATTATCCAAAATACTCAAGCTCCATTTTTGTTTCTCAGGAAATGAAAT
TAANAGAAAAAAGTGGAAGAAAAATGATATACGTAGAGACCTTACAGGGA
CATGGCAGTATGAAAACTGTCATGAAAAGAGGTGTGTGGAGAGAGGAGTA
AAGAAAGGAGAGGCACTGAGGAAAGGAGGAATCGCCGAGAGAAAAGCTTT
AAAACTTCCGCTCTCTATTAACTTTATAATGCATGCAGTTCATTTCTTCT
TCCTTGAAATGAGCCCTGAAAAGGCGGGTAGCCACCCCAAATATGGAGAA
GATTTTTGGTCTCCTAAGT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATGTTGGATACTAC
TCCACTATCTGATGTAGTATTGGTAAAGAACCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCGTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTC
TTTTTCTTTTTCTTTTTCTTCTTCTTCTTCTTTTTCTTTTTCTTTTTCTT
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTTTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTTTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTTTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTTTTCTTTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCCTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCCTCTCCTTCTCCTTTTCTTTTTCTTTTTCTCCCTTTTTCCTTTTTCCC
CCCTTTTTCTTTCCCTTTCCCTTTGGAANTCGGGAAAGGGCTTTTCTGTT
AAAACCGGGTGGTTTGTGAACTTTTTTTTTGATCAAACGAGGCCCGCCCT
CAAAAATTCATCCGCCCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_b23.b1 MSMg01no353_b23.b1 CHROMAT_FILE:
MSMg01no353_b23.b1 PHD_FILE: MSMg01no353_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:54 2005
         (524 letters)



>mm_chr8_102705025_102705948
          Length = 924

 Score =  946 bits (489), Expect = 0.0
 Identities = 512/520 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaatgaaaatgtgtggtatataaattttctaggcaaaggtagagtcatttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaatgaaaatgtgtggtatataaattttctaggcaaaggtagagtcatttg 264

                                                                       
Query: 65  aaattttactatagttttgtttgcattaagaaattacacttattagtgtaaatcatatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattttactatagttttgtttgcattaagaaattacacttattagtgtaaatcatatca 324

                                                                       
Query: 125 aatctaaattagcataatagaagcttccctgcaataaagagcttcagttctattgttaca 184
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||
Sbjct: 325 aatctaaattagcataatagaagcttctctgcaataaagagtttcagttctattgctaca 384

                                                                       
Query: 185 tggccttatttctatgaaactttattagcaatgaatatcaagcaggccaagaggtgtaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggccttatttctatgaaactttattagcaatgaatatcaagcaggccaagaggtgtaat 444

                                                                       
Query: 245 atattacttaatgtggtattgtagaatggaaaacatactcaatgaatatgcaaactcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atattacttaatgtggtattgtagaatggaaaacatactcaatgaatatgcaaactcaat 504

                                                                       
Query: 305 ttccaaatatgaaacatagctccacaaatacgtgttcagtagtaccaacatggtaactgc 364
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ttccatatatgaaacatagctccacaaatacgtgtccagtagtaccaacatggtaactgc 564

                                                                       
Query: 365 attatattttcttagacgtttataccacatatacctgtaattatccaaaatactcaagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attatattttcttagacgtttataccacatatacctgtaattatccaaaatactcaagct 624

                                                                       
Query: 425 ccatttttgtttctcaggaaatgaaattaanagaaaaaagtggaagaaaaatgatatacg 484
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 625 ccatttttgtttctcaggaaatgaaattaaaagaaaaaagtggaagaaaagtgatgtacg 684

                                                   
Query: 485 tagagaccttacagggacatggcagtatgaaaactgtcat 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagagaccttacagggacatggcagtatgaaaactgtcat 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)