BAC Information

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BAC

Clone NameMSMg01-353E14
Chromosome8 (Build37)
Map Location 48,415,162 - 48,415,583
singlet/doubletsinglet
Overlap geneStox2, 4930448N21Rik
Upstream geneLOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
Downstream geneD030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353E14.T7 (MSMg01no353_e14.b1)MSMg01-353E14.TJ (MSMg01no353_e14.g1)
ACCAG464201AG464202
length761780
length of high quality
(start - end)
510 (76 - 585)426 (77 - 502)
definitionCHROMAT_FILE: MSMg01no353_e14.b1 PHD_FILE: MSMg01no353_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:07 2005CHROMAT_FILE: MSMg01no353_e14.g1 PHD_FILE: MSMg01no353_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCAGTGCTCTATCTCAGGGACCCGCTCACTCCTGACCTGGGCTC
TACAGAGCCTGGGTACTTCTCTGCCACCCACAGCACCCTAGCCTGTTTCA
TAGGCTCAGGCCGCCTCCACTCCACAGTAGCTGCTGTTCTTGGTGGTTCT
CCCATGGTCCTGACAGCTCCAGAATACTTGGGTCTCTGCTGTGAATGGGC
TGCACCTTCACCGGAAGCAAGCCTCAGTCGCTCGCTCTCTGTGGCTTCTC
TGTAAACCTGGTGAACTCTTATACTTTACCTCGTTGACCTGCCAGCTTGA
GATATGGCCTTGGCCTCCTTTGGACCCCAGCTTGTATGAGGTGACCCCAA
AGGTTTCACCTCCGTGACGCCTGACTCCTCTTAATCACTACTAATTTCTC
AGCACCAGCGGACCAACATCCGTTCAGTTAAAACACCAGGTTAGCATTAG
TGCTGTAGGTCCTTCGCTAGTCACAGCTGGTTCTTAGCTCCAGTTGACAA
GACACCACAAATTCTTAACACAGAATGTCACACAAAATGGCCCTGGGCAA
AGCTTTGCCTCCCCCCTGAAATTTTCCAGGCCAGGGCTCCATCTTCTGCA
TGCATCTCAACACTCATCTTTCCAAAGCCCGATAAGCTTTGAACAGACCA
GGGTTTTTCTTCCCTAAAGGCCCAAAATCCTTCCAGTCCCTTGCGTGATA
ACACCGTTGGG
NNCCGATGATAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGCAGGCACACATCCATCGC
AGAGTTCTCTCAACAGACAGCGTCCTCCAAGTAGCACTTCTACCACGTTC
AAGGTTGGAATAGCCGGAACTCCCACTACCCTCTTCAGTGTGACAAAAGT
TATAACTGTGACTCCAAAGAGCATCCAAGGATGGGTGTGCAGGGAAAATT
AGCCATAGGAAGTTTTAGATATGAACACCTTTATTGCTAGCTAATAGCTC
ACCCTTTGTTTTTTGTAGCGGCTTATGTAAATGTCCCTAGAGGACCCCTG
TGCTGTAGGCACTATTTGAGGAGAGGTAGATGGATCCTTTGGGAACTGAA
GTCTAGAGGGAGGATTCGAACTCCTTGTGGATATGGTCTTTTTAAAGATT
TATTCGTTTGTTTGCTTCTTTGCTTATTATGAGTGCACTGTCACTATATT
CAGACACACCAGAAGAAGGCATCAGATTCCATTATAGATGGTTGTAAGCT
ACCATGTGTCCGCTGGGAATTGAATCTCAGGACCTCCGAATGAGAAGCCA
TCGTTCTTACCCGCTGATCTCTCCCGCCCCCCCTGTGTATATGTTTCCTA
TAGGTTCCTTTGTTTATCTTGACATTCCTTTCTCTTTCCTTCCTTTTTAT
CCCCTTTTTTCTTCCATTTCCCTTTCCCTCTCCCTTCCCCGTTTTTGGTT
TTCTTTTACACTTCCCAATAATTCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_e14.g1 MSMg01no353_e14.g1 CHROMAT_FILE:
MSMg01no353_e14.g1 PHD_FILE: MSMg01no353_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:07 2005
         (426 letters)



>mm_chr8_48414962_48415783
          Length = 822

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/426 (98%), Gaps = 4/426 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagcaggcacacatccatcgcagagttctctcaacagacagcgtcctccaagtagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttagcaggcacacatccatcgcagagttctctcaacagacagcgtcctccaagtagca 260

                                                                       
Query: 61  cttctaccacgttcaaggttggaatagccggaactcccactaccctcttcagtgtgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctaccacgttcaaggttggaatagccggaactcccactaccctcttcagtgtgacaa 320

                                                                       
Query: 121 aagttataactgtgactccaaagagcatccaaggatgggtgtgcagggaaaattagccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttataactgtgactccaaagagcatccaaggatgggtgtgcagggaaaattagccat 380

                                                                       
Query: 181 aggaagttttagatatgaacacctttattgctagctaatagctcaccctttgttttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaagttttagatatgaacacctttattgctagctaatagctcaccctttgttttttgt 440

                                                                       
Query: 241 agcggcttatgtaaatgtccctagaggacccctgtgctgtaggcactatttgaggagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcggcttatgtaaatgtccctagaggacccctgtgctgtaggcactatttgaggagagg 500

                                                                       
Query: 301 tagatggatcctttgggaactgaagtctagagggaggattcgaactccttgtggatatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatggatcctttgggaactgaagtctagagggaggattcgaactccttgtggatatgg 560

                                                                       
Query: 361 tctttttaaagatttattcgtttgtttgcttctttgcttattatgagtgcactgtcacta 420
           |||||||||||||||||||||||||||    ||||| |||||||||||||||||||||||
Sbjct: 561 tctttttaaagatttattcgtttgttt----ctttgtttattatgagtgcactgtcacta 616

                 
Query: 421 tattca 426
           ||||||
Sbjct: 617 tattca 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 822
Length adjustment: 9
Effective length of query: 417
Effective length of database: 813
Effective search space:   339021
Effective search space used:   339021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)