Query= MSMg01no353_g12.b1 MSMg01no353_g12.b1 CHROMAT_FILE:
MSMg01no353_g12.b1 PHD_FILE: MSMg01no353_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:16 2005
(580 letters)
>mm_chr8_46088625_46089603
Length = 979
Score = 1091 bits (564), Expect = 0.0
Identities = 576/580 (99%), Gaps = 1/580 (0%)
Strand = Plus / Minus
Query: 1 aggggaaatggctgtgattagtcactattcattctggtgggtcaaaaaagtaagtcagaa 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aggggaaatggccgtgattagtcactattcattctggtgggtcaaaaaagtaagtcagaa 720
Query: 61 actgaaagagaagataaaagcagagagcatgcacaccacaggcggtcccttcctgcatct 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 719 actgaaagagaagataaaagcagagagcatgcacaccacaggcggccccttcctgcatct 660
Query: 121 actgtcattttctgcaagcatcgtgaagttaaaaatagaaaggaaaagagggggacaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 659 actgtcattttctgcaagcatcgtgaagttaaaaatagaaaggaaaaga-ggggacaaag 601
Query: 181 actagaaatgttccttccttgatctagaaaaatattacattctctatacatggggcaggc 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 600 actagaaatgttccttccttgatctagaaaaacattacattctctatacatggggcaggc 541
Query: 241 tgaaagggctggtaaatttcccaccttcacactaattagtatcctcaaatttacctcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgaaagggctggtaaatttcccaccttcacactaattagtatcctcaaatttacctcaga 481
Query: 301 agtgtgaatgagactaaaggagaacaccaaaccttaccaaatgagcagaactgacaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtgtgaatgagactaaaggagaacaccaaaccttaccaaatgagcagaactgacaagtg 421
Query: 361 acttgtactcttttcacatcaatgcccacgtttagaaagttaaggcagacgtttagattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acttgtactcttttcacatcaatgcccacgtttagaaagttaaggcagacgtttagattc 361
Query: 421 gctgtaactctcccatgttaacctaaccttaaaattctttaactcaggacctcctctaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gctgtaactctcccatgttaacctaaccttaaaattctttaactcaggacctcctctaag 301
Query: 481 acaaggtcttcgagagggtaggcagcacacacaggcacctatcaaaggccggctaggtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acaaggtcttcgagagggtaggcagcacacacaggcacctatcaaaggccggctaggtgg 241
Query: 541 agatggagcagctacacgcttattcaacaactctgtcctg 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agatggagcagctacacgcttattcaacaactctgtcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_g12.g1 MSMg01no353_g12.g1 CHROMAT_FILE:
MSMg01no353_g12.g1 PHD_FILE: MSMg01no353_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:16 2005
(468 letters)
>mm_chr8_45969591_45970458
Length = 868
Score = 890 bits (460), Expect = 0.0
Identities = 466/468 (99%)
Strand = Plus / Plus
Query: 1 cctccaagaaataaaccaggagaggagaattcaatgacaagcttgtttctcagtgctgaa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccaagaaataaactaggagaggagaattcaatgacaagcttgtttctcagtgctgaa 260
Query: 61 ctgtagataacacccccctctatggaagaacagataaaagcctgatagatcatagatgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtagataacacccccctctatggaagaacagataaaagcctgatagatcatagatgcc 320
Query: 121 tattaattatttacataagtaaagcttactgcgactcacttatgtgctccgaatcttacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaattatttacataagtaaagcttactgcgactcacttatgtgctccgaatcttacc 380
Query: 181 cgggtgcaattaattagaaatgagatcaaagctacatgttccttttgatgtcctatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggtgcaattaattagaaatgagatcaaagctacatgttccttttgatgtcctatttat 440
Query: 241 ataacttttttctgtcagaagaaaataatcacaatgtcatgtgccatgtgaatacaggca 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataacttatttctgtcagaagaaaataatcacaatgtcatgtgccatgtgaatacaggca 500
Query: 301 agtcctttcaaacattgttttgagcttcttggctttttctcacagaggagacgtcctgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcctttcaaacattgttttgagcttcttggctttttctcacagaggagacgtcctgtg 560
Query: 361 aggtgacatcttgtctattctcactgcgtcctgttctatacacacgcttggtggtctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgacatcttgtctattctcactgcgtcctgttctatacacacgcttggtggtctctc 620
Query: 421 cagccacgttggtcctctggcttatttttgctttattgacatagcttc 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagccacgttggtcctctggcttatttttgctttattgacatagcttc 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
