BAC Information

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BAC

Clone NameMSMg01-353H18
Chromosome8 (Build37)
Map Location 32,068,219 - 32,229,737
singlet/doubletdoublet
Overlap geneLOC547008, Dusp26, Rnf122
Upstream geneEG628189
Downstream geneBC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353H18.T7 (MSMg01no353_h18.b1)MSMg01-353H18.TJ (MSMg01no353_h18.g1)
ACCAG464350AG464351
length770759
length of high quality
(start - end)		505 (52 - 556)392 (83 - 474)
definitionCHROMAT_FILE: MSMg01no353_h18.b1 PHD_FILE: MSMg01no353_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:22 2005CHROMAT_FILE: MSMg01no353_h18.g1 PHD_FILE: MSMg01no353_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,229,236 - 32,229,737)(32,068,219 - 32,068,610)
sequence
NNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCTCCAGCCGCCACGCCCACCCAGCACTAACAAGGGTTC
TGGTATCCAAATTCCACTCCTGAGATAGGCACCAATAACCACTGAACCAT
CTCCCCAGCTTTTTAGTAGAGAACAGCCGTAAACTCCTACATCCTCCTTC
ACCTTAAGGAGACATAGTCCCCAGAGCCTAACTAGCCCTGCCAAGCTCAA
GTCTTTGCACCTTGGCAATTTCACACCAGGGCAAAAGAACGAACGGATGT
CTACCTACGTCTCCCTAACTGTGAATGGGAAGGAGGCAAGTGGGATGGAA
GCACAGGGAAGGGAAGGTGTACTCGCTTTATCGCTCAGCCAACAGTCATT
CTAGACAACTTTAGAATAATTGGCCAAGAAGAGGTGGGACGCAGGCCAAC
CAGTGGTGACCTTATATGTGCTGGGGATAACTTGATAGGTTGCTATAAAT
AGAAAACAAGACCTCAGGGGTCCAAAGATGTGGAGGGCTGAGCTATATCC
TCGAATCAGAGGCTCCAGCACAAGGCTCCAGTGTGTGTGGGGGCTGTTGA
CGCTAATGGGGGTAAGGGGTCACCTTGGCTCAAAAACCCTTATGGCCTAG
CTTCCCTTGAAACCCCTTTTCTTTCTCTGGGCCCCTGTTGGGGAGGCCGG
CCCCCCCATTCTTCGGGCTAAAAAGGAGGCCTTACAACCCGGGGGTTCCA
ATGGGGGAAATAAAAAACCC

NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGTGTATGAACATG
CAACATTCCTTCTGGCAGACTATGAGGGTTCCAGTGACCTTTCCCATAGC
AAGGTCTTTTAAATCTGGACCTTCTTCTACCAAAACAACAATAGTTGCCA
TGACTTGTTAATCATGTATCGTGAAGTATTTCATCTCATGAAAAGTCTCA
GCAATGGCTGTTAATAGGTTTCCTCATCCCCCCTGTTAGGTAAGTGAACC
CGTTCTAAGACAGTATGATAATCTTCCCAAAGTCAAACAGAAGACACAAG
AAGGTTGGAGTGTCATTGAGAATAGTGTAGCCTAGCAGGAGAGGGTCACA
GGAAATAGGGATCCATCACACCCCCTAGAGTGGGGGCTTTTAAAAGAACT
GATGACAGAAACTGGGGTGAAGAGTGGTGAGCGGCATGTGATCACATACA
GCCTTCAGGTAGAGGGGCTCATTACCGAGATAACCATGACCCACGTCAGA
ACTCCCTTTGGCATTCTTGGCCTCTGCCAAGATATTCTTAAAATGGTGCC
TTTTTTCCCTTGTCCCATTTGACATTTTTCCCTTTCCTTTCCCCCTTCTA
TTACGTGTTCTCTTATTTTACCGTTTTTCCCCTTCCCCTCCCCTTTTTCG
TTCGTTCCCTCCTCTTTCCCTTTTTTCCTCTTTTTCCTTTCCTTCCTTCA
CCTTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_h18.b1 MSMg01no353_h18.b1 CHROMAT_FILE:
MSMg01no353_h18.b1 PHD_FILE: MSMg01no353_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:22 2005
         (505 letters)



>mm_chr8_32229033_32229937
          Length = 905

 Score =  963 bits (498), Expect = 0.0
 Identities = 501/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctccagccgccacgcccacccagcactaacaagggttctggtatccaaattc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ggaattccctccagccgccacgcccacccagcactaacaagggttctggtatccaaattc 646

                                                                       
Query: 64  cactcctgagataggcaccaataaccactgaaccatctccccagctttttagtagagaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cactcctgagataggcaccaataaccactgaaccatctccccagctttttagtagagaac 586

                                                                       
Query: 124 agccgtaaactcctacatcctccttcaccttaaggagacatagtccccagagcctaacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agccgtaaactcctacatcctccttcaccttaaggagacatagtccccagagcctaacta 526

                                                                       
Query: 184 gccctgccaagctcaagtctttgcaccttggcaatttcacaccagggcaaaagaacgaac 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 525 gccctgccaagctcaagtctttgcaccttggcaaattcacaccagggcaaaagaacgaac 466

                                                                       
Query: 244 ggatgtctacctacgtctccctaactgtgaatgggaaggaggcaagtgggatggaagcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggatgtctacctacgtctccctaactgtgaatgggaaggaggcaagtgggatggaagcac 406

                                                                       
Query: 304 agggaagggaaggtgtactcgctttatcgctcagccaacagtcattctagacaactttag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agggaagggaaggtgtactcgctttatcgctcagccaacagtcattctagacaactttag 346

                                                                       
Query: 364 aataattggccaagaagaggtgggacgcaggccaaccagtggtgaccttatatgtgctgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aataattggccaagaagaggtgggacgcaggccaaccagtggtgaccttatatgtgctgg 286

                                                                       
Query: 424 ggataacttgataggttgctataaatagaaaacaagacctcaggggtccaaagatgtgga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggataacttgataggttgctataaatagaaaacaagacctcaggggtccaaagatgtgga 226

                                 
Query: 484 gggctgagctatatcctcgaat 505
           ||||||||||||||||||||||
Sbjct: 225 gggctgagctatatcctcgaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_h18.g1 MSMg01no353_h18.g1 CHROMAT_FILE:
MSMg01no353_h18.g1 PHD_FILE: MSMg01no353_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:22 2005
         (392 letters)



>mm_chr8_32068019_32068810
          Length = 792

 Score =  758 bits (392), Expect = 0.0
 Identities = 392/392 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgtgtatgaacatgcaacattccttctggcagactatgagggttccagtgaccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgtgtatgaacatgcaacattccttctggcagactatgagggttccagtgaccttt 260

                                                                       
Query: 61  cccatagcaaggtcttttaaatctggaccttcttctaccaaaacaacaatagttgccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatagcaaggtcttttaaatctggaccttcttctaccaaaacaacaatagttgccatg 320

                                                                       
Query: 121 acttgttaatcatgtatcgtgaagtatttcatctcatgaaaagtctcagcaatggctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgttaatcatgtatcgtgaagtatttcatctcatgaaaagtctcagcaatggctgtt 380

                                                                       
Query: 181 aataggtttcctcatcccccctgttaggtaagtgaacccgttctaagacagtatgataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataggtttcctcatcccccctgttaggtaagtgaacccgttctaagacagtatgataat 440

                                                                       
Query: 241 cttcccaaagtcaaacagaagacacaagaaggttggagtgtcattgagaatagtgtagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcccaaagtcaaacagaagacacaagaaggttggagtgtcattgagaatagtgtagcc 500

                                                                       
Query: 301 tagcaggagagggtcacaggaaatagggatccatcacaccccctagagtgggggctttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcaggagagggtcacaggaaatagggatccatcacaccccctagagtgggggctttta 560

                                           
Query: 361 aaagaactgatgacagaaactggggtgaagag 392
           ||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaactgatgacagaaactggggtgaagag 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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