BAC Information

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BAC

Clone NameMSMg01-353J14
Chromosome8 (Build37)
Map Location 105,019,782 - 105,019,889
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353J14.T7 (MSMg01no353_j14.b1)MSMg01-353J14.TJ (MSMg01no353_j14.g1)
ACCAG464437AG464438
length779790
length of high quality
(start - end)		466 (51 - 516)290 (80 - 369)
definitionCHROMAT_FILE: MSMg01no353_j14.b1 PHD_FILE: MSMg01no353_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:31 2005CHROMAT_FILE: MSMg01no353_j14.g1 PHD_FILE: MSMg01no353_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAAGCAAAACAACCTTG
AGATTCCACCTAACACCAGTCAGAAGTGCTAAGATCAAAAATACAGTTGA
CAGCAGATGCTGGCTAGGATGTGGGATAAGAGGAACACTCATCCATTGCT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTACCAGAGGATTCCATAATACCTCTCCT
GGGCATATGTCCAGAAGATGTTCCAACTGGTAAGAAAGAAACATTGTTCA
TAGCAGCCTTATTTATAAGAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAANATATGGTACATTTACACAAAGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCTTAGGCCAATGGA
TGGACCTCGGAGGCATCATCCTGAGTGAGGGACCCATCCCAAAAGACTCC
CATGGGATGGACTCCCTGATAAGTGGGTATTATCCCGCAAACTTATAAAA
CCCCCGATACAAGATAAAATTTTGCCAAGAAATGAATTTCTCAAAAAAAA
AAACAAAGGGGGTAACCCTTGCCCCCCTCTAATTTTGAAAACAAAACCCC
CCCGCCGGAACTCTCCTCCCAATTTTTGC

NNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAACACAAAATATTAT
TCCATGATAATTAGCAATGCTCCCTTGTAGGAGGTGGGGAAAATGCATGA
GACTGTGTGATAGGGAGTGACCATTCCAGGATGGTGTGATAGGGAGTGAC
CATTCCAGGATGGTGTGATAGGGAGTGACCATTCCAGGATGGTGTGATAG
GGAGTGACCATTCCAGGATGGTGTGATAGGGAGTGACCATTCCAGGATGG
TGTGATAGGGAGTGACCATTCCAGGATGGTGTGATAGGGAGTGACCATTC
CAGGATGGTGTGATAGGGAATGACCATTCCAGGATGGCGCGATAGGCAAT
GACCATTCCTGGATGGCGTGCCAGGCAGCGACCATTCCTTCCAGCCGTCT
TCATGTTGCACATTTTCTCACTATCTATTCTTCTCTCCCTTGTTCCCGTT
TCGCTCTCCTTCCCCCCTTTCGTTCCTTCCCTTTCCCCCCCCCCCTTTTT
CTTTTCCTCCTTTTTTTCCCCCTTTTCCCCCCTTTCTTCCCCTTCCTTTC
TTTTCCTCCCCCTTTCCTCCCATTTTTTCCCCTTTTCCCTTTCCCTTTTT
TTTCTTTTTCTTTTACCCCCTTCCTTTCCTTTATTTCCTCCTTTTACCCT
TTTTCCCCTTTCCCTTCCCCTTTTCCCCTTTTTTTCCCTTTCTTTCCCCT
TTTCTTTCCCTTTTTCTTTCCCTTCTTTCCCCCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_j14.g1 MSMg01no353_j14.g1 CHROMAT_FILE:
MSMg01no353_j14.g1 PHD_FILE: MSMg01no353_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:31 2005
         (290 letters)



>mm_chr8_105019582_105020271
          Length = 690

 Score =  201 bits (104), Expect = 3e-56
 Identities = 107/108 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaagaacacaaaatattattccatgataattagcaatgctcccttgtaggaggtgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 caaaagaacacaaaatattattccatgataattagcaatgctcccttgtaggaggtgggg 249

                                                           
Query: 61  aaaatgcatgagactgtgtgatagggagtgaccattccaggatggtgt 108
           ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 248 aaaatgcatgagactgtgtgatagggaatgaccattccaggatggtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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