BAC Information

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BAC

Clone NameMSMg01-353N11
Chromosome8 (Build37)
Map Location 3,200,094 - 3,200,460
singlet/doubletsinglet
Overlap geneInsr
Upstream geneEG664801, EG209786, D630014A15Rik
Downstream geneA430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353N11.T7 (MSMg01no353_n11.b1)MSMg01-353N11.TJ (MSMg01no353_n11.g1)
ACCAG464619AG464620
length774776
length of high quality
(start - end)
354 (67 - 420)367 (79 - 445)
definitionCHROMAT_FILE: MSMg01no353_n11.b1 PHD_FILE: MSMg01no353_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:49 2005CHROMAT_FILE: MSMg01no353_n11.g1 PHD_FILE: MSMg01no353_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAAATCTCCCTGCCTCTGACTCCCAAGTGCTAGGAGCTGGG
ATTAAAGGCATGTGCCACCACTTCCTGGCTTTTTTTTTAAGATTTATTTA
TTTATTATATATAATACAGTGTATCTGTCTTCAGACACCCCAGAAGAGGG
CATCAGATGTCATTATGGATGGTTGTGAGCCACCATGTGGTTTCTGGGAT
TTGAACTCAGGACCTTCAGAAGAGCAGTCAGTACTCTTAACTGCTGAGCC
ATCTCTCCAGCCTGGGATTTGTTATTTTAAAACCCCATGACAAGCCTAGA
ATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTGCCTATAGGTCATGATGTATCTCTCAATTACTGC
CTCCGCATCTGTTTACATATTGCCAGGATTACTATGTATTATACCTCTGA
TATTCGCCTTAACCCTCCAGTTATTTGCTTTCCTTTTTTATACCTCTTTT
GGCCTTGGTTTTTATTTACTGTAATAGACACAATGATTTGAAACTACTGC
ACCTATCTGTCTATCCCCGGTTATTTTTTCCCTTATATTACTCCTTTTCC
TCTATTTCTCTGTTCTTTCATACTCATTTTCTTCTTCGTTTCTTTTACGG
TTTTATTTTTCCTGTTCACAGCATTCTGTTTTTGTTTGTAGTTTGCATCT
CCTATGTAATTTATCTGCTTAGTA
CTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCATCACTGTATACTCCA
GGAGATATAAGCAGAAGGATCAGAAGTTCAAGGTCATCAGAACAAGTACA
AGGCTAGCTTGGGCTATATGAAAATGAGTCTTGATCTGATAGATAGATGA
TAGATAGAAAGATAGATAGATAGATACATTTTCAAAGAGGTACCGCAAAA
GGGAAGATGAAAAAATTCTGGGTTGTTTAAATTAATGATTCTAAATTTGA
ACATTTGAGACATAATGGGCTATTTAAGTTTTAAGTTGGGGCCTGGAACA
CTGAAAGTCTCATTCATGACTTATATAATAATTCTACTGGACAGCTCTGG
TTGTTTCCATAAAGTCCAGCCAATCAAAAGGCCCCAGCTAAAATTAAAAA
AAAAACATAACACAATATTTGTGACCGTATGAGCATGCGCGTATTTTACG
GCAATAAATTTAAACATGGCGATCTTGGTCCTCACACCCCTTTCCATCCG
TCTTTTCCATGTCCCTTCTCATTCACCAAGGTTCGATCACATTACCCCCT
TTTTTTTCCCCTTCTTCTTCCGCTTTCCATACCTTATTCTGTTTATTTCC
CGTCTGTTCCCTTACTTTTTCCCCTATATTCCCCCCTTTTTCCCCCTCCA
TCCCCTTTCTTACCCATTTTCCTTTTTTTCCTCCTTTCTCCCTTCCGTTA
TTCCTTTTCCCTTCCCTCCTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_n11.g1 MSMg01no353_n11.g1 CHROMAT_FILE:
MSMg01no353_n11.g1 PHD_FILE: MSMg01no353_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:49 2005
         (367 letters)



>mm_chr8_3199894_3200660
          Length = 767

 Score =  663 bits (343), Expect = 0.0
 Identities = 361/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcccatcactgtatactccaggagatataagcagaaggatcagaagttcaaggtcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcccatcactgtatactccaggagatataagcagaaggatcagaagttcaaggtcatc 260

                                                                       
Query: 61  agaacaagtacaaggctagcttgggctatatgaaaatgagtcttgatctgatagatagat 120
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 261 agaacaagtacaaggctagcttgggctaaacgaaaatgagtcttgatctgatagatagat 320

                                                                       
Query: 121 gatagatagaaagatagatagatagatacattttcaaagaggtaccgcaaaagggaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagatagaaagatagatagatagatacattttcaaagaggtaccgcaaaagggaagat 380

                                                                       
Query: 181 gaaaaaattctgggttgtttaaattaatgattctaaatttgaacatttgagacataatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaaattctgggttgtttaaattaatgattctaaatttgaacatttgagacataatgg 440

                                                                       
Query: 241 gctatttaagttttaagttggggcctggaacactgaaagtctcattcatgacttatataa 300
           ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaggtaagttttaagttgggacctggaacactgaaagtctcattcatgacttatataa 500

                                                                       
Query: 301 taattctactggacagctctggttgtttccataaagtccagccaatcaaaaggccccagc 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 taattctactggacagctctggttgtttccagaaagtccagccaatcaaaaggccccagc 560

                  
Query: 361 taaaatt 367
           |||||||
Sbjct: 561 taaaatt 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)