BAC Information

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BAC

Clone NameMSMg01-353P06
Chromosome8 (Build37)
Map Location 68,021,581 - 68,021,972
singlet/doubletsinglet
Overlap genenone
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1
Downstream geneLOC100040967, March1, LOC100040986, 1810029B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353P06.T7 (MSMg01no353_p06.b1)MSMg01-353P06.TJ (MSMg01no353_p06.g1)
ACCAG464703AG464704
length750745
length of high quality
(start - end)
394 (63 - 456)466 (84 - 549)
definitionCHROMAT_FILE: MSMg01no353_p06.b1 PHD_FILE: MSMg01no353_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:58 2005CHROMAT_FILE: MSMg01no353_p06.g1 PHD_FILE: MSMg01no353_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGCATTCATTATTGTACCACTTGCAACAATGAACTGAAAGTCG
AATTAAAAAGCTACAAGACTGAGTCTCTTTTTATGATTTTCTGGCTCAGA
GATTATTGGCACTCAAGGAAGTGTCTTTAGCTCTTACATATTTAAGTTTT
TTTTTCTTGGTTTCTTTTTATTTTTATTTTATTTTATTTTTTGGCTAATA
ACAGAAAGGACAGTGAACTGTGCATGGTAGAATGATGCTCAGAGTCCAAA
TTTAAGACAGCATTTTCCTAACTGTGCACTAAGCCAACCAGATGATGGCA
GAGGCATTGCCACTGGCTGCCTCAAGATCTAATTCTCACAGTATATGCTT
ATAGACAAATGGACAGCCCATTGTGAACCAGGCACTATGAGATCAATGAT
CAGAAATGTCTAGGCTTTACCACAGAGCACATAACGAGAGGAACGATCCT
GAAGAATAGCACTGGGGTTACTCCATCTCTGCTAATAGCCCTTACTGCAC
ACATATTGCCACGACCAGCGCCTCTACCTGATTAACCACGACCAAGGAAG
AGACTCCCACCTCAATACTTCTTGCCCCCTAAAGTCTACCTCTCCGATTG
TTTTTTTACTACCTCCGCTTCTTATTCCTCCTCTTGCTTGACTTATCTGT
TTTTCCACACTCTCTTTTACCCCCACATTCCCTCCTTCCCCCTGTCCTCC

NCCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTTGTATCAAGTTG
ACAAAACACCAACCAGAATAAGAATCCATTTAAGGTATTCTTCAACTCTG
TGTATTCACCCATCCAAAGACAATGGTTTCCAACAGTATGTGAAATGCAT
AGTTACTTAAACAGCACAATATTTAAACCGGAGTGGTTAGAAGCACTGAG
TACTCTTCCAGAGAACAACCTGGGTTTAATTCCCAGCATCCACATGGCAG
TTCAAAACTGCCTATAACTTCAGTTCCAGAAGATATTTCACCCTTACAAA
AACATACATACAGGAAAGAACACCTGCATAAAACAAAATAAAATATAAAA
ATAAACAGAATCATTAATAAATATATAAAATAAAACAAAAAAATGATTTC
ACATTGAGTACCTCCCCATATCTACCAAGCTTAACAAAACATAAGTCAAC
CTATAGAATTATAAATAACTCATCTTATGTGCGCCTAACATTATACAGTG
CGTATGATTGGAACTATCTATAATTCTATGATTGGCCCAAAAAAATCCAC
TGAACTTTACGCTTAATTCAGTATGTCTACACCTTACCACCCTGCTTCGG
CCTTCTCCTTTGTTCTCACTACACTTCCCTTTTGCCCATTTGTCTTTTCT
TTTACCATTTTGTCCCTTTTTCCTAACCTTTTTCCCATTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_p06.b1 MSMg01no353_p06.b1 CHROMAT_FILE:
MSMg01no353_p06.b1 PHD_FILE: MSMg01no353_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:58 2005
         (394 letters)



>mm_chr8_68021381_68022174
          Length = 794

 Score =  685 bits (354), Expect = 0.0
 Identities = 384/394 (97%), Gaps = 2/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattattgtaccacttgcaacaatgaactgaaagtcgaattaaaaagctacaagactga 60
           |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattactgtaaaacttgcaacaatgaactgaaagtcgaattaaaaagctacaagactga 260

                                                                       
Query: 61  gtctctttttatgattttctggctcagagattattggcactcaaggaagtgtctttagct 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctctttttatgattttctggcttagagattattggcactcaaggaagtgtctttagct 320

                                                                       
Query: 121 cttacatatttaagtttttttttcttggtttctttttatttttattttattttatttttt 180
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cttacatatttaag-ttttttttcttggtttctttttctttttattttattttatttttt 379

                                                                       
Query: 181 ggctaataacagaaaggacagtgaactgtgcatggtagaatgatgctcagagtccaaatt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggttaataacagaaaggacagtgaactgtgcatggtagaatgatgctcagagtccaaatt 439

                                                                       
Query: 241 taagacagcattttcctaactgtgcactaagccaaccagatgatggcagaggcattgcca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 440 taagacagcattttcctaactgtgcactaagccaacc-gatgatggcagaggcattgtca 498

                                                                       
Query: 301 ctggctgcctcaagatctaattctcacagtatatgcttatagacaaatggacagcccatt 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 499 ctggctgcctcaagatctaattctcaaagtatatgcttatagacaaatggacagcccatt 558

                                             
Query: 361 gtgaaccaggcactatgagatcaatgatcagaaa 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 559 gtgaaccaggcactatgagatcaatgatcagaaa 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)