Query= MSMg01no354_b24.b1 MSMg01no354_b24.b1 CHROMAT_FILE:
MSMg01no354_b24.b1 PHD_FILE: MSMg01no354_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:11 2005
(474 letters)
>mm_chr8_113154294_113155165
Length = 872
Score = 758 bits (392), Expect = 0.0
Identities = 433/470 (92%), Gaps = 37/470 (7%)
Strand = Plus / Plus
Query: 5 gaattctaccactgaaccaccaatgctccagctgtgagcagctgtgtggcacctccctat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaccactgaaccaccaatgctccagctgtgagcagctgtgtggcacctccctat 264
Query: 65 aacctcatccctgggcctccatgtgtatatgttgagtcatagcccagtttatgatactgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacctcatccctgggcctccatgtgtatatgttgagtcatagcccagtttatgatactgc 324
Query: 125 cacatcagcttagcttcaagaagagcagcaagctccagagccagaaggaagtgaggggtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacatcagcttagcttcaagaagagcagcaagctccagagccagaaggaagtgaggggtg 384
Query: 185 agtgtaggtctgtgtgcatgtgaagtaaatttgcctttgggctttgagacaggaaagaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgtaggtctgtgtgcatgtgaagtaaatttgcctttgggctttgagacaggaaagaga 444
Query: 245 gctccactccctcctcagtcagcagcaaaacacacagagactgtgggcgagcctcccctc 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 gctccactccctcctcagtcagcagcaaaacaca--gagactgtgggcgagcctcccctc 502
Query: 305 tgccgtggagctggtgtgctgctctcagttttcacactcgtggagctggtgtgctgctct 364
||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgccgtggagctggtgtgctgctctcagttttcacact---------------------- 540
Query: 365 cagttttcacactgcgttctgctggcgactggcccagaccaagggcagcactgtggagtt 424
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 -------------gcgttctgctggcgactggcccagaccaagggcagcactgtggagtt 587
Query: 425 ctttcaggtggagatgaggaagccagactcctgcagccagtcacacttgt 474
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctttcaggtggagatgaggaagccagactcctgcagccagtcacacttgt 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space: 399968
Effective search space used: 399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_b24.g1 MSMg01no354_b24.g1 CHROMAT_FILE:
MSMg01no354_b24.g1 PHD_FILE: MSMg01no354_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:11 2005
(392 letters)
>mm_chr8_113340381_113341175
Length = 795
Score = 605 bits (313), Expect = e-177
Identities = 327/333 (98%), Gaps = 5/333 (1%)
Strand = Plus / Minus
Query: 64 accatgtagacaacactggccttgaatttacaaggatttgcctgtagcccctgaggtgct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 accatgtagacaacactggccttgaatttacaaggatttgcctgtagcccctgaggtgct 736
Query: 124 ggggataaagctgtacactactacacttggctatctttttactttttaaagaaccagggc 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 735 ggggataaagctgtacactactacacttggctatctttttactttttaaaaaaccagggc 676
Query: 184 ttgtggtgtgtagcacagtggtaggcttcgtgtctagcatgtgcagagctctaggttaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgtggtgtgtagcacagtggtaggcttcgtgtctagcatgtgcagagctctaggttaga 616
Query: 244 ttcctaggactgaaaaacaagggtaaagtgggtttgaccctaaaactataaaccag-ccc 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 615 ttcctaggactgaaaaacaagggtaaagtgggtttgaccctaaaactataaaccagcccc 556
Query: 303 ccctttctaggacctttaaacaaagtttttttgtcctgtttctatttctcccttt---aa 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 555 ccctttctaggacctttaaacaaag-ttttttgtcctgtttctatttctcccttttacaa 497
Query: 360 gctttttttgtgacctgggacaaatatgctgac 392
|||||||||||||||||||||||||||||||||
Sbjct: 496 gctttttttgtgacctgggacaaatatgctgac 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 795
Length adjustment: 9
Effective length of query: 383
Effective length of database: 786
Effective search space: 301038
Effective search space used: 301038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|