BAC Information

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BAC

Clone NameMSMg01-354B24
Chromosome8 (Build37)
Map Location 113,154,498 - 113,341,175
singlet/doubletdoublet
Overlap geneVac14, BC060632, 2010004A03Rik, Sf3b3
Upstream genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
Downstream geneCog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354B24.T7 (MSMg01no354_b24.b1)MSMg01-354B24.TJ (MSMg01no354_b24.g1)
ACCAG464830AG464831
length787789
length of high quality
(start - end)
474 (48 - 521)392 (77 - 468)
definitionCHROMAT_FILE: MSMg01no354_b24.b1 PHD_FILE: MSMg01no354_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:11 2005CHROMAT_FILE: MSMg01no354_b24.g1 PHD_FILE: MSMg01no354_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,154,498 - 113,154,930)(113,340,844 - 113,341,175)
sequence
NNCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACCACTGAACCACCAATGCTCCAGCTGTGAGCAGCTGTGTGG
CACCTCCCTATAACCTCATCCCTGGGCCTCCATGTGTATATGTTGAGTCA
TAGCCCAGTTTATGATACTGCCACATCAGCTTAGCTTCAAGAAGAGCAGC
AAGCTCCAGAGCCAGAAGGAAGTGAGGGGTGAGTGTAGGTCTGTGTGCAT
GTGAAGTAAATTTGCCTTTGGGCTTTGAGACAGGAAAGAGAGCTCCACTC
CCTCCTCAGTCAGCAGCAAAACACACAGAGACTGTGGGCGAGCCTCCCCT
CTGCCGTGGAGCTGGTGTGCTGCTCTCAGTTTTCACACTCGTGGAGCTGG
TGTGCTGCTCTCAGTTTTCACACTGCGTTCTGCTGGCGACTGGCCCAGAC
CAAGGGCAGCACTGTGGAGTTCTTTCAGGTGGAGATGAGGAAGCCAGACT
CCTGCAGCCAGTCACACTTGTCAAAGAGCCCAGCCACTCCCTATGAACTC
TGAGCAGAAATCTGTAGTCCTTGGGCTGCCTCAGGCCCTGTTTGGTTGAG
GGAACAGGCTCCTCTGGCATGAGTTCTGTGGGGGAACTGACCCAAAAGGG
ACCCCCCCCCCCCCCCCACCATATAAAGTAATATAGGCAAAAATTTTTAA
AACAAATTTTTTTTTTCAAAAAAAAAAAAATTTGCCTTGGGGGGGAATAA
AACCAGGGTTTCCCGCGGGGGGTGAATATTATTCCCN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGTGCACTGTCACATATAGCTG
TAGTCTTTGCTTTTTGTTTTTTGAGACATTTTGCTATCCACCATGTAGAC
AACACTGGCCTTGAATTTACAAGGATTTGCCTGTAGCCCCTGAGGTGCTG
GGGATAAAGCTGTACACTACTACACTTGGCTATCTTTTTACTTTTTAAAG
AACCAGGGCTTGTGGTGTGTAGCACAGTGGTAGGCTTCGTGTCTAGCATG
TGCAGAGCTCTAGGTTAGATTCCTAGGACTGAAAAACAAGGGTAAAGTGG
GTTTGACCCTAAAACTATAAACCAGCCCCCCTTTCTAGGACCTTTAAACA
AAGTTTTTTTGTCCTGTTTCTATTTCTCCCTTTAAGCTTTTTTTGTGACC
TGGGACAAATATGCTGACCTTGNTTACTCGGAATTCAGTTCCCTGTGAAG
AACTGTTTCCTGGTCCTTGAAGCTCCCACAGAAGGTGTGTTACTTGGACC
CCTGGATTCATCCCTGTAAACAAGTTTTCGATTTTCCCCCTCCTCCCGGT
CTTCCAAAATTTTTTTTGCCGGAAAAACCATTTATTCCCAGCTGTGGGAA
TCCTTTGTAACCCGTGTATCTTATGTTGTACACCTCGTTTTTTTTTTCTT
TTTTTTAATTAAAAATAATTCTCCCTCTACGGTCCTTTCGCCTTTTTTTT
TTTTAATAACACAAACAAAACTCTCCTCTCTTCTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_b24.b1 MSMg01no354_b24.b1 CHROMAT_FILE:
MSMg01no354_b24.b1 PHD_FILE: MSMg01no354_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:11 2005
         (474 letters)



>mm_chr8_113154294_113155165
          Length = 872

 Score =  758 bits (392), Expect = 0.0
 Identities = 433/470 (92%), Gaps = 37/470 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaccactgaaccaccaatgctccagctgtgagcagctgtgtggcacctccctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaccactgaaccaccaatgctccagctgtgagcagctgtgtggcacctccctat 264

                                                                       
Query: 65  aacctcatccctgggcctccatgtgtatatgttgagtcatagcccagtttatgatactgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacctcatccctgggcctccatgtgtatatgttgagtcatagcccagtttatgatactgc 324

                                                                       
Query: 125 cacatcagcttagcttcaagaagagcagcaagctccagagccagaaggaagtgaggggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacatcagcttagcttcaagaagagcagcaagctccagagccagaaggaagtgaggggtg 384

                                                                       
Query: 185 agtgtaggtctgtgtgcatgtgaagtaaatttgcctttgggctttgagacaggaaagaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgtaggtctgtgtgcatgtgaagtaaatttgcctttgggctttgagacaggaaagaga 444

                                                                       
Query: 245 gctccactccctcctcagtcagcagcaaaacacacagagactgtgggcgagcctcccctc 304
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 445 gctccactccctcctcagtcagcagcaaaacaca--gagactgtgggcgagcctcccctc 502

                                                                       
Query: 305 tgccgtggagctggtgtgctgctctcagttttcacactcgtggagctggtgtgctgctct 364
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 503 tgccgtggagctggtgtgctgctctcagttttcacact---------------------- 540

                                                                       
Query: 365 cagttttcacactgcgttctgctggcgactggcccagaccaagggcagcactgtggagtt 424
                        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 -------------gcgttctgctggcgactggcccagaccaagggcagcactgtggagtt 587

                                                             
Query: 425 ctttcaggtggagatgaggaagccagactcctgcagccagtcacacttgt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctttcaggtggagatgaggaagccagactcctgcagccagtcacacttgt 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space:   399968
Effective search space used:   399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no354_b24.g1 MSMg01no354_b24.g1 CHROMAT_FILE:
MSMg01no354_b24.g1 PHD_FILE: MSMg01no354_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:11 2005
         (392 letters)



>mm_chr8_113340381_113341175
          Length = 795

 Score =  605 bits (313), Expect = e-177
 Identities = 327/333 (98%), Gaps = 5/333 (1%)
 Strand = Plus / Minus

                                                                       
Query: 64  accatgtagacaacactggccttgaatttacaaggatttgcctgtagcccctgaggtgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 accatgtagacaacactggccttgaatttacaaggatttgcctgtagcccctgaggtgct 736

                                                                       
Query: 124 ggggataaagctgtacactactacacttggctatctttttactttttaaagaaccagggc 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 735 ggggataaagctgtacactactacacttggctatctttttactttttaaaaaaccagggc 676

                                                                       
Query: 184 ttgtggtgtgtagcacagtggtaggcttcgtgtctagcatgtgcagagctctaggttaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgtggtgtgtagcacagtggtaggcttcgtgtctagcatgtgcagagctctaggttaga 616

                                                                       
Query: 244 ttcctaggactgaaaaacaagggtaaagtgggtttgaccctaaaactataaaccag-ccc 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 615 ttcctaggactgaaaaacaagggtaaagtgggtttgaccctaaaactataaaccagcccc 556

                                                                       
Query: 303 ccctttctaggacctttaaacaaagtttttttgtcctgtttctatttctcccttt---aa 359
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||
Sbjct: 555 ccctttctaggacctttaaacaaag-ttttttgtcctgtttctatttctcccttttacaa 497

                                            
Query: 360 gctttttttgtgacctgggacaaatatgctgac 392
           |||||||||||||||||||||||||||||||||
Sbjct: 496 gctttttttgtgacctgggacaaatatgctgac 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 795
Length adjustment: 9
Effective length of query: 383
Effective length of database: 786
Effective search space:   301038
Effective search space used:   301038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)