Query= MSMg01no354_d18.b1 MSMg01no354_d18.b1 CHROMAT_FILE:
MSMg01no354_d18.b1 PHD_FILE: MSMg01no354_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:20 2005
(695 letters)
>mm_chr8_60334008_60335106
Length = 1099
Score = 975 bits (504), Expect = 0.0
Identities = 528/538 (98%), Gaps = 4/538 (0%)
Strand = Plus / Minus
Query: 162 taataaaacttacacatgtggggtctggagagatggcccagtggttaaatgcactagctg 221
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1099 taataaaacttacacatgtggggtctggagagatagcccagtggttaaatgcactagctg 1040
Query: 222 ttctttctagaggactcagttcgattcccagcacccgtatagcagctcataactgtctgt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 ttctttctagaggactcagttcgattcccagcacccgtatagcagctcataactgtctgt 980
Query: 282 aactccagttccagggaatctaaaaccctcacatagatatacatgcaggcaaacagcaac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 aactccagttccagggaatctaaaaccctcacatagatatacatgcaggcaaacagcaac 920
Query: 342 gcacatacaataaaaataaataaaattttttaaaacttagacattttaacaaactttaat 401
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gcacatacaataaaagtaaataaaattttttaaaacttagacattttaacaaactttaat 860
Query: 402 aaaattattatccttaataaatctctttgggttcatgttcttcttcccttgctttgtgaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aaaattattatccttaataaatctctttgggttcatgttcttcttcccttgctttgtgaa 800
Query: 462 gctgtcaacagcgttcacatttttctctactacatccaccatccttttaatagcagtgag 521
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 799 gctgtcaacagcgttcacatttttctctactacatccacgatccttttaacagcagtgag 740
Query: 522 acattctagtatgaaattatattacacattacttaaaagaaaaccatcatactgctcccc 581
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acattctagtatggaattatattacacattacttaaaagaaaaccatcatactgctcccc 680
Query: 582 caaaataataagatattaacaacactgcactaaaagaaacatag----aaacactggaga 637
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 679 caaaataataagatattaacaacactgcactaaaagaagcatagttagaaacactggaga 620
Query: 638 acaaaatagttacaaaaacataaactgattaaagagctatgttttggataaagaaaca 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acaaaatagttacaaaaacataaactgattaaagagctatgttttggataaagaaaca 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1099
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1089
Effective search space: 745965
Effective search space used: 745965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_d18.g1 MSMg01no354_d18.g1 CHROMAT_FILE:
MSMg01no354_d18.g1 PHD_FILE: MSMg01no354_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:20 2005
(455 letters)
>mm_chr8_60294213_60295064
Length = 852
Score = 822 bits (425), Expect = 0.0
Identities = 447/457 (97%), Gaps = 7/457 (1%)
Strand = Plus / Plus
Query: 1 actctaaatgtaattgctttggcatctctttcttgccctgggacttactagaactgctca 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 actctaaatgtaattgctttggcatctctctcttgccctgggacttactagaactgctca 260
Query: 61 tttcagaaggctggcttatattatgcaagagaaacacgagaccatggcataaagattgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcagaaggctggcttatattatgcaagagaaacacgagaccatggcataaagattgcc 320
Query: 121 atggggccttcagattcatacatacgctgctccaactagtcttttactgaaaccaggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggggccttcagattcatacatacgctgctccaactagtcttttactgaaaccaggtct 380
Query: 181 tgccacttaaagttaagtgttgcattatcagaaaaaatcctgtataaccttaaaatagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccacttaaagttaagtgttgcattatcagaaaaaatcctgtataaccttaaaatagga 440
Query: 241 acttttaaaattaagggtcatttgtcaaaaacaattcacccccccca--aaaaaaaaact 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 acttttaaaattaagggtcatttgtcaaaaacaattcacccccccccccaaaaaaaaact 500
Query: 299 aaaaagggaaatttgtataaataaggactttttttttttttggaaattaagataagtaac 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aaaaagggaaatttgtataaataaggactttttttttttt-ggaaattaagataagtaac 559
Query: 359 tcttttctgacaaaaggaaaataaattaagacaggcctcctccctcaccccgaccctgcc 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 tcttttctgacaaaaggaaaataaattaagacagccctcctccctcaccccgaccctgcc 619
Query: 419 tttttttttttttttttttgaactggattcctttaca 455
||||||||||||||| ||||||||||||||||||
Sbjct: 620 ttttttttttttttt----gaactggattcctttaca 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 852
Length adjustment: 10
Effective length of query: 445
Effective length of database: 842
Effective search space: 374690
Effective search space used: 374690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
