NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAAATTGATGCTCTGTATCTTCCTCAGTTGCTAGCAAC
TTTACTTAATGAGAAGAGATCTCTCATCAAACTCAAAGCTCACTTATTCT
CCTTGTCTAGCTAGACAGCTTATTCTGGGAATCCCGGTTCTACTTGCCCA
GTGCTGGGAATGCAGGTGGGTTGTCATGGCAATTGGGCATTTCCACAGTG
CCAGTGTTGGAAAGCATGGTCTCATGCTGTGGAAAGCACTTCACCTGCTG
CTCTATCTTCCTGGCCACACAGGTCACTTTCAAATGCTCACATTAAATTA
TATTACATACATCTATACATTGAAGACATATTGGAGTATGTTAAGCTGGC
TATAAATTCAAGATTATCTGTATGTTCTAGTAGAATTTATTTGATAACAG
ATTGATTCAAAGAGACAAGGAGAAAATATTTCTAGAATTTTGGTTTTATC
TTCTTTTCTGATGATGTTTCCATAATTACTTTTGAAAGACAATAGGCAAC
TTTCTCCATAACACCTGTATCCTCTTTATTGTTATGGCTTATTTATTCTA
AATCTTANNAAAATTAGGTATGAGGACATAATTGAATTTGTATTTTTTTT
TTANAATTTAAATGGTATAATTTCACCCAGATATTTTTCCTATGATTAAT
TTACCGAGTGGCATGTGTTCTGACTAGTTCACTAGACATTCATG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACCTAAAACCTAGGCTG
TTTTTGGATGAGGGACTTTTAATGATTTCTTCTATTTCCTTATGTGTTAT
GAGACTGTTAAATAGTTTATCCTGATTTAACTTTGGTGTCTGGAATCTGT
AAAGAAAACCATCCATTTCATCTATATTTTCCAGTTTTGCTAAGTATAGG
CTTTTGTGGTAGGATCTGATGATTTTTTTTTAATATCCTTAGTATCTGTT
GTTATGTCTCACTTTGATTTGTGATTTTGTTATTTGAATACTGTCTCTGT
GCCCTTTAGTTAGTTTGGCTAAGGGTTTAACTATCTTCTTGATTTTTTTC
GAAGAAGCAGCTCTTAGTTCTCTTTGTTTCTAATTGGTTGATTTCAGCAC
TGACTTTGAGTTTATTTCCTGGCATCTACTCCTCTTAGGTGTGTTTGCTT
CTTTTTGTTCTAGAGCTTTAAGATGTGCTGTTAAGCTGTTATCCTATGAT
CTCTCCAATTTCATTATGAAGGCACTCAGGACTATGAATTTTGTTCTTAG
CACCCCTCTTATTTTGCCCAATAAGTTTGGGGACCTTCATTTCCCTTCAA
CCCAGAAACTATTTCCCTTCTTTATTTCCTCCCCGACCAGTTTTCCTTTG
AAAAAAAGATTGTTTCCTTTTCGCTAAAATGGGGGCCCTCCCGCGGCTTT
TGTAATAAAAACCAA

Query= MSMg01no354_f05.b1 MSMg01no354_f05.b1 CHROMAT_FILE:
MSMg01no354_f05.b1 PHD_FILE: MSMg01no354_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:27 2005
         (623 letters)



>mm_chr8_38575820_38576842
          Length = 1023

 Score = 1181 bits (611), Expect = 0.0
 Identities = 617/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaaattgatgctctgtatcttcctcagttgctagcaactttacttaatgaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaaattgatgctctgtatcttcctcagttgctagcaactttacttaatgaga 263

                                                                       
Query: 64  agagatctctcatcaaactcaaagctcacttattctccttgtctagctagacagcttatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agagatctctcatcaaactcaaagctcacttattctccttgtctagctagacagcttatt 323

                                                                       
Query: 124 ctgggaatcccggttctacttgcccagtgctgggaatgcaggtgggttgtcatggcaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgggaatcccggttctacttgcccagtgctgggaatgcaggtgggttgtcatggcaatt 383

                                                                       
Query: 184 gggcatttccacagtgccagtgttggaaagcatggtctcatgctgtggaaagcacttcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggcatttccacagtgccagtgttggaaagcatggtctcatgctgtggaaagcacttcac 443

                                                                       
Query: 244 ctgctgctctatcttcctggccacacaggtcactttcaaatgctcacattaaattatatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctgctctatcttcctggccacacaggtcactttcaaatgctcacattaaattatatt 503

                                                                       
Query: 304 acatacatctatacattgaagacatattggagtatgttaagctggctataaattcaagat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatacatctatacattgaagacatattggagtatgttaagctggctataaattcaagat 563

                                                                       
Query: 364 tatctgtatgttctagtagaatttatttgataacagattgattcaaagagacaaggagaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatctgtatgttctagtagaatttatttgataacagattgattcaaagagacaaggagaa 623

                                                                       
Query: 424 aatatttctagaattttggttttatcttcttttctgatgatgtttccataattacttttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatatttctagaattttggttttatcttcttttctgatgatgtttccataattacttttg 683

                                                                       
Query: 484 aaagacaataggcaactttctccataacacctgtatcctctttattgttatggcttattt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaagacaataggcaactttctccataacacctgtatcctctttattgttatggcttattt 743

                                                                       
Query: 544 attctaaatcttannaaaattaggtatgaggacataattgaatttgtattttttttttan 603
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 744 attctaaatcttagtaaaattaggtatgaggacataattgaatttgtattttttttttag 803

                               
Query: 604 aatttaaatggtataatttc 623
           ||||||||||||||||||||
Sbjct: 804 aatttaaatggtataatttc 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)