Query= MSMg01no354_k07.b1 MSMg01no354_k07.b1 CHROMAT_FILE:
MSMg01no354_k07.b1 PHD_FILE: MSMg01no354_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:51 2005
(492 letters)
>mm_chr8_112562339_112563230
Length = 892
Score = 826 bits (427), Expect = 0.0
Identities = 475/497 (95%), Gaps = 13/497 (2%)
Strand = Plus / Minus
Query: 5 gaattccttgtttagcagctatcacgaagggcattatcccagctacaggatcagtgtatc 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattccttggggagcagctatcacgaagggcattatcccagctacaggatcagtgtatc 806
Query: 65 aggtaaccctgacatctaagctggggattttgatggctggaggaagagggctaggaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggtaaccctgacatctaagctggggattttgatggctggaggaagagggctaggaaaaa 746
Query: 125 ggaatggtgttggggaacactctgagtcaccaaggggatcttctagaaaag-----aaaa 179
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 745 ggaatggtgttggggaacactctg-gtcaccaaggggatcttctagaaaagaaaaaaaaa 687
Query: 180 aaaac----cctcaaactgcctaccagaagctgaaccccaccagctccacccataaagga 235
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaaacaaaacctcaaactgcctaccagaagctgaaccccaccagctccacccataaagga 627
Query: 236 tgagaaagagcctcaaatgtgggtaggaatgttgtaatggagccctagtatatctgaccg 295
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 626 tgagaaagagcctcaaatgtgggtaggaatgttgcaatggagccctagtatatctgacca 567
Query: 296 tccagattctctcccgttctccgctgaatgggagatcggagcagggacctgcaggctttg 355
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 566 tccagattctctcccgttctccgctgaatgggggatcggagcagggacctgcaggttttg 507
Query: 356 tccagctcaggcagagtgaagagtatggccattaatcagatcaaatgggtagagctattg 415
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 tccagctcaggcagagtggagagcatggccattaatcagatcaaatgggtagagctattg 447
Query: 416 caacgaaacatcaatcaatcaaatgtcagttgttccttttgaaaaataaggaatcggttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caacgaaacatcaatcaatcaaatgtcagttgttccttttgaaaaataaggaatcggttg 387
Query: 476 ctgcggggggggggggg 492
| |||||||||||||
Sbjct: 386 c---ggggggggggggg 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_k07.g1 MSMg01no354_k07.g1 CHROMAT_FILE:
MSMg01no354_k07.g1 PHD_FILE: MSMg01no354_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:51 2005
(495 letters)
>mm_chr8_112422269_112423162
Length = 894
Score = 928 bits (480), Expect = 0.0
Identities = 491/498 (98%), Gaps = 7/498 (1%)
Strand = Plus / Plus
Query: 1 caggatgaaagctgagccttgggatttcttttacacacaaggctatagcacagctgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatgaaagctgagccttgggatttcttttacacacaaggctatagcacagctgttgg 260
Query: 61 ctctcatgccaccaatcttctaccaccactcgataaatcatcctatgaccagaatcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcatgccaccaatcttctaccaccactcgataaatcatcctatgaccagaatcttaa 320
Query: 121 tatgcctttaagttccagtgtaaactacaagagtaagtttgtgtttgatggtaggtatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgcctttaagttccagtgtaaactacaagagtaagtttgtgtttgatggtaggtatgg 380
Query: 181 cagtgctagacagggaatcttaaaagatgctctattagtttagataagctaatgtaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgctagacagggaatcttaaaagatgctctattagtttagataagctaatgtaattt 440
Query: 241 gaatgagaaacttatgttcagtaaagggaattttgaaagtaatat---aaaaaaaagggg 297
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gaatgagaaacttatgttcagtaaagggaattttgaaagtaatattaaaaaaaaaaggg- 499
Query: 298 gggcaatatatacatttggtgaccaaaccaaaaagttacaagaagataggtaggcaagaa 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ---caatatatacatttggtgaccaaaccaaaaagttacaagaagataggtaggcaagaa 556
Query: 358 ggtaggcagagaggtagataggtcggtgaagaatctcttgactatgtaacaaattgcctc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggtaggcagagaggtagataggtcggtgaagaatctcttgactatgtaacaaattgcctc 616
Query: 418 agttgacagtactgtcaactgtatattttgtactttctatgggttggaaatacaggaata 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agttgacagtactgtcaactgtatattttgtactttctatgggttggaaatacaggaata 676
Query: 478 gctttagctgactgttca 495
||||||||||||||||||
Sbjct: 677 gctttagctgactgttca 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
