BAC Information

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BAC

Clone NameMSMg01-354L19
Chromosome8 (Build37)
Map Location 93,631,602 - 93,786,378
singlet/doubletdoublet
Overlap geneRbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Upstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
Downstream geneAJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L19.T7 (MSMg01no354_l19.b1)MSMg01-354L19.TJ (MSMg01no354_l19.g1)
ACCAG465293AG465294
length763796
length of high quality
(start - end)		532 (46 - 577)456 (77 - 532)
definitionCHROMAT_FILE: MSMg01no354_l19.b1 PHD_FILE: MSMg01no354_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:58 2005CHROMAT_FILE: MSMg01no354_l19.g1 PHD_FILE: MSMg01no354_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,631,602 - 93,632,127)(93,785,923 - 93,786,378)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTACCCTGTTTGAGGTCCAGTATCATGAAGTGTTTCCATGTCTT
CTGCATTTCATAGCTGCAGACTAACTGTGAGTCCTCTTTACATGTGGTAT
GAGATTCAAGTCCAGCTTCACGCTTTGTGTTGTTTTCTGGCTGCCACACC
GTTACTTAAGCCATGTTTCCCCACTGAATAAACGTTGCATGTTTGTGGAG
TCAGTTCTTGTGGACCTGTGGGTTCTATCGAGACCATCTCTTTGATTATG
TTCATCTGTGTCTCTCATAGTTAGTGCTTTATACTCTCAATGACTCTTGC
TTTTTTTGTAAACTTTGAAATTGGGAAATATGAGTCCTAATTTTATTTTA
CTTTAGATTATTTTAGCTATTCTGAGTCCCTTGGAAGTCCATAAAAATTT
TAGAGTCAAGTTGTCACTGTCATAAAAGAGTCACATGAAAATCTACAGAT
CACTTTGGGGAACTCGGNCATCTTCAGTTCCGTCTTCATTCCACATGGCA
TGTTTTCACATTTGTTTAGGTTCAGCTTTAACAATGATTCATGCTTTCAG
AATGTAGCTCTCACCCTTGNTATTTTCCTGTAAGTTTTGATGGTANTGTA
AATGCNNCTGTTTGGNTTTGATGGTCTCCTTGTAAGAAGTAANAAAACAG
NATGGTGTCGGTGCCCTGGTAATANCCAGCAACCTTGCTTAAGTGCGTTG
TTTTTCTGTGTCG

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGGTTCTGGACCCCGGTGGCTA
GGTTTATGTTAGGTGAGCCCATCCGTTTCCTCCAGTAGTCCACACGTTAT
GATTAAGATATATCCCCTTGGCCCCAGTTGGATCAGACAGACTTTGCCTT
CTGAGAGCAAAGGAAAGCAGGACTCTCCATGCCTGGATCATGTAAAATTT
GGAGCGGTTGGCAGCCATCTTCCACCATGTCAGTCAGTGAAATGAAATAT
GCAGAGTCTGAAGGAGAATAATGAGCCAGTATTCAGAGAAAAGTGGAGAG
TAAAGTAACTTCCGGTGTTTTCCCAAACGTATGAGCTGCTTAGGAACCAA
CCAAATTTCTGTCGTACAGGTCCATGAAATGTCGTCTTTGTTAGTTTTGC
TGGGCATGTTTTCTTTGACTTCAACTTAAATGTAGATTCTCAAACCAAGG
GAGGCACCTGCTTCCCAGAGATCACCTCCCTGTAGTAGACTTCACAGCAC
ACCTTGAAAGAATGATAGAGATGACAATTGGGGTTTTCTTTGGTTTCCAC
TTTTATGGATTGATTTGGCCGGGGTGGGAGGGGGGGGGGAATATGGTTAA
AACCTTCCCCCGGAGCTCTCTTGTGTACTGGTCAACTGGACTTGGGAATA
CTATACCTAATCGGTTCTGAGTTCCATTTTTCTCTTGGCAACACCCGAAG
ATTTTTTTGTGGGTCTTGTCGTCTCTCCTTTTTTTTTTCTACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l19.b1 MSMg01no354_l19.b1 CHROMAT_FILE:
MSMg01no354_l19.b1 PHD_FILE: MSMg01no354_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:58 2005
         (532 letters)



>mm_chr8_93631398_93632329
          Length = 932

 Score = 1004 bits (519), Expect = 0.0
 Identities = 524/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaccctgtttgaggtccagtatcatgaagtgtttccatgtcttctgcatttc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattacccagtttgaggtccagtatcatgaagtgtttccatgtcttctgcatttc 264

                                                                       
Query: 65  atagctgcagactaactgtgagtcctctttacatgtggtatgagattcaagtccagcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagctgcagactaactgtgagtcctctttacatgtggtatgagattcaagtccagcttc 324

                                                                       
Query: 125 acgctttgtgttgttttctggctgccacaccgttacttaagccatgtttccccactgaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acgctttgtgttgttttctggctgccacaccgttacttaagccatgtttccccactgaat 384

                                                                       
Query: 185 aaacgttgcatgtttgtggagtcagttcttgtggacctgtgggttctatcgagaccatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacgttgcatgtttgtggagtcagttcttgtggacctgtgggttctatcgagaccatct 444

                                                                       
Query: 245 ctttgattatgttcatctgtgtctctcatagttagtgctttatactctcaatgactcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttgattatgttcatctgtgtctctcatagttagtgctttatactctcaatgactcttg 504

                                                                       
Query: 305 ctttttttgtaaactttgaaattgggaaatatgagtcctaattttattttactttagatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttttttgtaaactttgaaattgggaaatatgagtcctaattttattttactttagatt 564

                                                                       
Query: 365 attttagctattctgagtcccttggaagtccataaaaattttagagtcaagttgtcactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attttagctattctgagtcccttggaagtccataaaaattttagagtcaagttgtcactg 624

                                                                       
Query: 425 tcataaaagagtcacatgaaaatctacagatcactttggggaactcggncatcttcagtt 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 tcataaaagagtcacatgaaaatctacagatcactttggggaactcggtcatcttcagtt 684

                                                         
Query: 485 ccgtcttcattccacatggcatgttttcacatttgtttaggttcag 530
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccgtcttcattccacatggcatgttttcacatttgtttaggttcag 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_l19.g1 MSMg01no354_l19.g1 CHROMAT_FILE:
MSMg01no354_l19.g1 PHD_FILE: MSMg01no354_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:59 2005
         (456 letters)



>mm_chr8_93785723_93786578
          Length = 856

 Score =  882 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggttctggaccccggtggctaggtttatgttaggtgagcccatccgtttcctccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tatggttctggaccccggtggctaggtttatgttaggtgagcccatccgtttcctccagt 597

                                                                       
Query: 61  agtccacacgttatgattaagatatatccccttggccccagttggatcagacagactttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agtccacacgttatgattaagatatatccccttggccccagttggatcagacagactttg 537

                                                                       
Query: 121 ccttctgagagcaaaggaaagcaggactctccatgcctggatcatgtaaaatttggagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ccttctgagagcaaaggaaagcaggactctccatgcctggatcatgtaaaatttggagcg 477

                                                                       
Query: 181 gttggcagccatcttccaccatgtcagtcagtgaaatgaaatatgcagagtctgaaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gttggcagccatcttccaccatgtcagtcagtgaaatgaaatatgcagagtctgaaggag 417

                                                                       
Query: 241 aataatgagccagtattcagagaaaagtggagagtaaagtaacttccggtgttttcccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aataatgagccagtattcagagaaaagtggagagtaaagtaacttccggtgttttcccaa 357

                                                                       
Query: 301 acgtatgagctgcttaggaaccaaccaaatttctgtcgtacaggtccatgaaatgtcgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acgtatgagctgcttaggaaccaaccaaatttctgtcgtacaggtccatgaaatgtcgtc 297

                                                                       
Query: 361 tttgttagttttgctgggcatgttttctttgacttcaacttaaatgtagattctcaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttgttagttttgctgggcatgttttctttgacttcaacttaaatgtagattctcaaacc 237

                                               
Query: 421 aagggaggcacctgcttcccagagatcacctccctg 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 aagggaggcacctgcttcccagagatcacctccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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