BAC Information

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BAC

Clone NameMSMg01-354L22
Chromosome8 (Build37)
Map Location 81,180,002 - 81,180,413
singlet/doubletsinglet
Overlap geneSlc10a7
Upstream geneEdnra, EG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, LOC100039466
Downstream geneLsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L22.T7 (MSMg01no354_l22.b1)MSMg01-354L22.TJ (MSMg01no354_l22.g1)
ACCAG465298AG465299
length773793
length of high quality
(start - end)		486 (48 - 533)413 (79 - 491)
definitionCHROMAT_FILE: MSMg01no354_l22.b1 PHD_FILE: MSMg01no354_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:59 2005CHROMAT_FILE: MSMg01no354_l22.g1 PHD_FILE: MSMg01no354_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCCTTAAAGAGATAGCCCCACTGGCCATCTATCCCTTGCTTCA
GGGAAGATGAGCGGGGATGAGAGAGCCCTGGGATGTATGCTTGTTATAGT
GTGTGTGTGTTTTGTGTTTGGCACATGTGTTAGGTGCAGAGTGTGCGGCC
CGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGGAGGCGGGACA
ATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAATTATGCTGCGTTATG
CCGTGGGGTGCGAGGCTAAGCACTGCACAGAGGATAGCTTGCTGTTGGCA
TCCTGTGGAAGGCACGTCTGATTGCATGAAGGTTCAGTGTCCTAGTTCCC
TTCCCCCAGGAAAAACGACACGGGAGCTGGCCAAGACCTCTCTGGGTGAT
GAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGCACACTGGGGA
TCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAATTAAGATCTG
GCCATAAGTTAATTAACATCCTGGCCTTTTGATGCACCTGCCGCAAGCAA
AACACAATCTCCCCAATAGTGTCTTGGCTTGATAAAGAGTTATTTATTGA
TAATATCCCCCGTGTGCTGTTCCCCCCCTTTAACCTGTTTTTTATCCACT
TCTGTCTGTCCTCTCTATTTCCCCTTACGACTTTTTTTCCCGGGTTTCTA
TTCCCCCACTTTTTTTCTTCCCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGAGTTACTTAAGAAGTAG
GGCACTTCTCCAGTTTCCTTACAGTGTTTTACATCTGTGAATGTTCAGAA
GGTTTAATGAAGTTTTCCTGGAAAGCACGGCAAACACCCACACCCATCAC
GCTGTGAGCATTGATTGATTGGACCTCAGTTGTTCTTGTTCCTGTTGATC
TGCCTGGGAAAGGCCAGGTCAGCAGCCAACTCTTCAGTACAGAAGAGTGA
GTTCTCATAGCCAGAGAGAACGAGTAATTATTCAGCTTGAAAGTAAAAAG
AGAATCAAGCATGGTGGTGTATAGCTGTACTTCCAGCACTTAGGAGGAGG
TGGACACAGGACAACCAGGTGTTCAACGCCAGCCTTGGCTACATAGCAAG
TTTGATCCCATATCCAAACAAACAAACAAAAGAGAGAAATTGTATGGGTT
TTTTTTTTCTTTTTGNNGTTGNTCTTTATCCACTGGNGCAGNCTGAATAT
TANGACCCTAAATTCCGCTTGTTCAGTTCGGCTTTTTTATTTCCTTTCCC
GCTGGCCCTTCCTTTTCCTGTCAACTTTAACAAGGAGAGACACCTTTTGG
TCCAAATGGTAAAAGCCCTTTGAAAAAAAGAAAGTTTTCCCTAGGAAATA
AATATTGCCTGCTGTGTTTGGTAATTATCCTCCCCCCCATAGGCAAGGAT
GGTGTTTTGTTTTCCCCCCCCCTCCCACCAAAAATAAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l22.g1 MSMg01no354_l22.g1 CHROMAT_FILE:
MSMg01no354_l22.g1 PHD_FILE: MSMg01no354_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:59 2005
         (413 letters)



>mm_chr8_81179802_81180611
          Length = 810

 Score =  717 bits (371), Expect = 0.0
 Identities = 403/415 (97%), Gaps = 5/415 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagagttacttaagaagtagggcacttctccagtttccttacagtgttttacatctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagagttacttaagaagtagggcacttctccagtttccttacagtgttttacatctgt 260

                                                                       
Query: 61  gaatgttcagaaggtttaatgaagttttcctggaaagcacggcaaacacccacacccatc 120
           |||||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 261 gaatgttcagaa-gtttaatgaagtttccctggaaaacacagcaaacacccacacccatc 319

                                                                       
Query: 121 acgctgtgagcattgattgattggacctcagttgttcttgttcctgttgatctgcctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acgctgtgagcattgattgattggacctcagttgttcttgttcctgttgatctgcctggg 379

                                                                       
Query: 181 aaaggccaggtcagcagccaactcttcagtacagaagagtgagttctcatagccagagag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaggccaggtcagcagctaactcttcagtacagaagagtgagttctcatagccagagag 439

                                                                       
Query: 241 aacgagtaattattcagcttgaaagtaaaaagagaatcaagcatggtggtgtatagctgt 300
           |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 aacgagtaa--attcagcttgaaagtaaaaagagaatcaagcatggtggcgtatagctgt 497

                                                                       
Query: 301 acttccagcacttaggaggaggtggacacaggacaaccaggtgttcaacgccagccttgg 360
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 498 acttccagcacttaggaggaggtgggcacaggacaaccaggtgttcaatgccagccttgg 557

                                                                  
Query: 361 ctacatagcaagtttgatcccatatccaaacaaacaaacaaaa--gagagaaatt 413
           |||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 558 ctacatagcaagtttgatcccatatccaaacaaacaaacaaaaaagagagaaatt 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 810
Length adjustment: 9
Effective length of query: 404
Effective length of database: 801
Effective search space:   323604
Effective search space used:   323604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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