Query= MSMg01no355_f02.b1 MSMg01no355_f02.b1 CHROMAT_FILE:
MSMg01no355_f02.b1 PHD_FILE: MSMg01no355_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:44 2005
(628 letters)
>mm_chr8_16471528_16472555
Length = 1028
Score = 1017 bits (526), Expect = 0.0
Identities = 585/610 (95%), Gaps = 13/610 (2%)
Strand = Plus / Minus
Query: 22 attgggcgtggtaacaaacagtagtagagtaggagacttggaagt-caatgcagaagaat 80
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1026 attgggcgtggtaacaaacagtagtagagtaggagacttggaagtccaatgcagaagaac 967
Query: 81 catgagtcccaggcaagcctggaatacattgagaga-cccagtattaggaaacaaaaaca 139
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct: 966 catgagtcccaggcaagcctgggatacattgagagaccccagtattaggaaacacaaaca 907
Query: 140 gaaaaaattaaaactaataatagaatttaataaattgtatcattggtgtcatacacaata 199
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 906 gaaaaaattaaaactaataatagaatttaataaattgtatcattggtgtcatatacaata 847
Query: 200 catacaacaaggggttgattataatcgttataatcgttgccgtattgattaaataattat 259
| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 846 cgtacaacaaggggttga---------ttataatcgttgccgtattgattaaataattat 796
Query: 260 tggacaaacatatgaaaaagggtatttatgggacaagagtgtttctgat-aattgagagt 318
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 795 tggacaaacatatgaaaaagggtatttatgggacaagagtgtttctgatcaa-tgagaga 737
Query: 319 ggcaactcatgaattagcacatggtatatattgtctaagaattcctcaatgagaaccaac 378
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 736 ggcaactcatgaattatcacatggtatatactgtctaagaattcctcaatgagaaccaac 677
Query: 379 agtttggggaggtattgatagcatacctgccctccaagaatgaacagtccctggacttac 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agtttggggaggtattgatagcatacctgccctccaagaatgaacagtccctggacttac 617
Query: 439 cacttcaatagaatgtttttggtctagaaattcattcataaaattaggatagttctctgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 616 cacttcaatagaatgtttttggtctagaaattcattcataaaattaggataattctctgc 557
Query: 499 gtaaataaaaacatgatttatattttaactgatctgtgtcaaaccccaggcttttaaaat 558
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 556 gtaaataaaaacatgatttatattttaacttatctgtgtcaaaccccaggcttttaaaat 497
Query: 559 cgacagaagctgtttttcagatttgatagtttgctgctattggccaggtttcccaacagg 618
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgacagaagctgtttttctgatttgatagtttgctgctattggccaggtttcccaacagg 437
Query: 619 ttttatcttc 628
||||||||||
Sbjct: 436 ttttatcttc 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_f02.g1 MSMg01no355_f02.g1 CHROMAT_FILE:
MSMg01no355_f02.g1 PHD_FILE: MSMg01no355_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:44 2005
(511 letters)
>mm_chr8_16306362_16307272
Length = 911
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%)
Strand = Plus / Plus
Query: 1 tctacttaagccaggtctgtcacagggttgacagttcagtaaagtgactatgactgttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacttaagccaggtctgtcacagggttgacagttcagtaaagtgactatgactgttac 260
Query: 61 aatgatgacaaagacccacgataagataaaactatgccctctttccaaataatgggtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgatgacaaagacccacgataagataaaactatgccctctttccaaataatgggtctt 320
Query: 121 gctctgaccaaggagcctcccttcagaaggctgctccagcaggagcctcagctaaagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctgaccaaggagcctcccttcagaaggctgctccagcaggagcctcagctaaagaca 380
Query: 181 ttggaggagtaaccatccccactccaccccctatccacttgctcctggtgcaggctgcta 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaggaataaccatccccactccaccccctatccacttgctcctggtgcaggctgcta 440
Query: 241 cagagccctgtagctggggtgaatctacctgttctaaatactcagaaaagtgtaagtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagccctgtagctggggtgaatctacctgttctaaatactcagaaaagtgtaagtttt 500
Query: 301 cctttttcttctttgtaacttgtagctgtcttttgcttctttacagattcttttttcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttttcttctttgtaacttgtagctgtcttttgcttctttacagattcttttttcttc 560
Query: 361 caccttcctctaccctttcaaacccctgactctagataagagagaagaaagggtagagaa 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 caccttcctctaccctttcaaacccctgactctagataaaagagaagaaagggtagagaa 620
Query: 421 gaaagaaaagcaatctctgaataaagtcagggatcagaaatggggcaacaggattgttag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaagaaaagcaatctctgaataaagtcagggatcagaaatggggcaacaggattgttag 680
Query: 481 actacttcctgctgattgggtacatggaggt 511
|||||||||||||||||||||||||||||||
Sbjct: 681 actacttcctgctgattgggtacatggaggt 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
